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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
166.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 103.6
2188
Female, age 91, both hemispheres
108.7
2301
Female, age 85, both hemispheres
107.6
2090
Male, age 80, both hemispheres
105.2
1984
Male, age 76, both hemispheres
92.9
Dorsal cochlear nucleus nTPM: 124.1
2802
Male, age 74, right hemisphere
136.0
2058
Male, age 76, both hemispheres
131.0
2370
Male, age 61, both hemispheres
127.3
2378
Male, age 80, both hemispheres
114.0
2187
Female, age 91, both hemispheres
112.2
Dorsal tegmental nucleus nTPM: 118.5
2083
Male, age 80, both hemispheres
130.3
2358
Male, age 61, both hemispheres
119.2
2326
Male, age 74, both hemispheres
118.3
1936
Male, age 76, left hemisphere
106.2
Dorsolateral tegmental area nTPM: 122.1
2654
Male, age 80, both hemispheres
135.9
2337
Male, age 61, both hemispheres
129.0
2360
Male, age 74, both hemispheres
123.0
2751
Female, age 85, both hemispheres
113.9
2141
Male, age 76, both hemispheres
108.6
Kolliker-Fuse nucleus nTPM: 124.7
2163
Male, age 80, both hemispheres
149.5
2793
Female, age 91, left hemisphere
115.1
2315
Male, age 76, right hemisphere
109.3
Lateral lemniscal nuclei nTPM: 135.8
2169
Male, age 76, both hemispheres
159.2
2036
Male, age 80, both hemispheres
151.9
2746
Female, age 85, left hemisphere
138.3
2453
Male, age 74, right hemisphere
126.1
2320
Female, age 91, left hemisphere
103.4
Lateral parabrachial nucleus nTPM: 128.5
2139
Female, age 85, right hemisphere
156.5
2790
Male, age 61, both hemispheres
125.2
2013
Male, age 80, both hemispheres
123.2
2792
Male, age 76, both hemispheres
108.9
Lateral vestibular nucleus nTPM: 126.4
2184
Male, age 76, both hemispheres
134.8
2311
Male, age 80, both hemispheres
118.0
Locus coeruleus nTPM: 166.8
2014
Male, age 55, unknown
202.3
2123
Female, age 91, both hemispheres
198.0
2317
Female, age 72, unknown
175.6
1980
Male, age 76, both hemispheres
167.4
2788
Male, age 74, unknown
143.3
2162
Male, age 80, both hemispheres
140.5
2720
Male, age 74, both hemispheres
140.5
Medial parabrachial nucleus nTPM: 122.0
2170
Female, age 91, both hemispheres
146.8
2854
Male, age 80, both hemispheres
126.0
2156
Male, age 61, both hemispheres
123.5
2786
Male, age 76, both hemispheres
111.2
2463
Female, age 85, right hemisphere
102.4
Medial periolivary nuclei nTPM: 145.1
2171
Female, age 85, both hemispheres
195.6
2063
Male, age 76, both hemispheres
180.8
2791
Male, age 74, right hemisphere
129.3
2081
Male, age 80, both hemispheres
115.0
2458
Female, age 91, both hemispheres
104.6
Motor facial nucleus nTPM: 140.3
2062
Male, age 76, both hemispheres
202.5
2365
Male, age 74, right hemisphere
134.3
2795
Female, age 91, both hemispheres
132.9
2697
Female, age 85, both hemispheres
129.6
2126
Male, age 61, both hemispheres
124.4
2327
Male, age 80, both hemispheres
118.2
Motor trigeminal nucleus nTPM: 121.6
2079
Male, age 80, both hemispheres
133.9
2560
Male, age 74, both hemispheres
128.4
2309
Male, age 76, both hemispheres
126.3
2335
Male, age 61, both hemispheres
122.0
2321
Female, age 91, both hemispheres
97.7
Nuclei of the trapezoid body nTPM: 157.6
1983
Male, age 76, both hemispheres
184.0
2735
Female, age 85, both hemispheres
183.5
2159
Male, age 61, both hemispheres
180.2
2166
Male, age 80, both hemispheres
125.7
2368
Female, age 91, both hemispheres
114.6
Nucleus raphe magnus nTPM: 151.5
2160
Male, age 61, both hemispheres
197.9
2172
Female, age 85, both hemispheres
188.2
2051
Male, age 76, both hemispheres
150.0
2455
Male, age 74, both hemispheres
141.3
2328
Male, age 80, both hemispheres
124.5
2459
Female, age 91, both hemispheres
106.8
Paramedian reticular nucleus nTPM: 148.7
2050
Female, age 85, both hemispheres
181.7
2057
Male, age 80, both hemispheres
156.7
2313
Male, age 61, both hemispheres
152.7
2052
Male, age 76, both hemispheres
103.8
Pedunculopontine tegmental nucleus nTPM: 125.4
2334
Male, age 80, both hemispheres
145.3
2338
Male, age 61, both hemispheres
120.4
1921
Female, age 85, both hemispheres
110.5
Pontine nuclei nTPM: 157.5
1863
Male, age 55, unknown
193.0
2727
Male, age 61, right hemisphere
191.5
2787
Female, age 85, both hemispheres
188.2
2109
Female, age 72, unknown
177.2
1968
Male, age 76, left hemisphere
155.7
2115
Male, age 80, left hemisphere
129.2
2454
Male, age 74, left hemisphere
113.5
2319
Female, age 91, both hemispheres
111.8
Pontine raphe nucleus nTPM: 147.4
2122
Female, age 85, midline
154.1
2853
Male, age 76, midline
140.7
Posteroventral cochlear nucleus nTPM: 120.4
2752
Female, age 85, both hemispheres
144.6
2371
Male, age 61, both hemispheres
133.4
2070
Male, age 76, both hemispheres
122.9
2135
Female, age 91, both hemispheres
106.7
2341
Male, age 80, both hemispheres
94.2
Principal sensory trigeminal nucleus nTPM: 140.9
2158
Male, age 61, both hemispheres
188.8
2008
Male, age 80, left hemisphere
146.8
2324
Male, age 76, both hemispheres
125.0
2367
Female, age 91, left hemisphere
102.9
Reticular pontine nucleus, caudal nTPM: 124.4
2092
Male, age 76, both hemispheres
145.7
2332
Male, age 80, right hemisphere
128.9
2559
Male, age 74, both hemispheres
123.3
2457
Female, age 91, both hemispheres
99.9
Reticular pontine nucleus, oral nTPM: 119.9
2012
Female, age 85, both hemispheres
142.7
1939
Male, age 80, both hemispheres
126.2
2361
Male, age 74, both hemispheres
119.9
2167
Male, age 76, both hemispheres
109.5
2366
Female, age 91, both hemispheres
101.5
Reticulotegmental nucleus nTPM: 130.7
2325
Male, age 76, both hemispheres
151.4
2452
Male, age 74, both hemispheres
129.0
2333
Male, age 80, both hemispheres
126.1
2322
Female, age 91, both hemispheres
116.2
Spinal trigeminal nucleus, oral nTPM: 119.0
2164
Male, age 80, both hemispheres
131.9
2737
Female, age 85, both hemispheres
124.9
1978
Male, age 76, both hemispheres
100.2
Subcoeruleus area nTPM: 124.6
2323
Female, age 91, left hemisphere
143.1
1958
Male, age 80, both hemispheres
133.2
2089
Male, age 76, left hemisphere
120.9
2451
Male, age 74, both hemispheres
120.5
2369
Female, age 85, left hemisphere
105.4
Superior olive nTPM: 130.6
1875
Female, age 85, both hemispheres
154.9
2020
Male, age 76, both hemispheres
138.0
2364
Male, age 74, right hemisphere
124.4
2561
Female, age 91, both hemispheres
120.8
2329
Male, age 80, right hemisphere
115.0
Ventral periolivary nuclei nTPM: 148.1
2130
Female, age 85, both hemispheres
165.9
2165
Male, age 80, both hemispheres
155.0
2023
Male, age 76, both hemispheres
137.5
2794
Female, age 91, left hemisphere
133.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 124.4
1959
Male, age 76, both hemispheres
130.9
2840
Female, age 85, both hemispheres
129.1
2449
Male, age 74, both hemispheres
128.5
2161
Male, age 80, both hemispheres
128.3
2359
Male, age 61, both hemispheres
124.5
2456
Female, age 91, both hemispheres
105.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.5
Pig sample
Sample description
nTPM
Pons nTPM: 250.5
Samples: 4
Max nTPM: 276.4
Min nTPM: 206.7
Sample A
Female
249.0
Sample B
Female
206.7
Sample C
Male
276.4
Sample D
Male
269.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
