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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.0 nTPM
HPA Brain:141.5 nTPM
GTEx:126.0 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:265.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 125.6
2194 Female, age 79, both hemispheres 139.7
1981 Female, age 72, midline 138.2
2565 Male, age 75, midline 137.5
2816 Male, age 47, midline 114.0
2048 Male, age 55, midline 98.3
Cervical spinal cord, dorsal horn
nTPM: 115.2
2173 Female, age 72, unknown 156.4
2296 Male, age 66, both hemispheres 115.7
2069 Male, age 47, both hemispheres 111.5
2297 Male, age 75, both hemispheres 110.9
1877 Male, age 55, unknown 102.8
2721 Male, age 90, both hemispheres 93.9
Cervical spinal cord, ventral horn
nTPM: 141.5
2809 Male, age 90, both hemispheres 167.1
2480 Male, age 75, both hemispheres 153.7
2820 Female, age 79, both hemispheres 146.2
2068 Male, age 55, unknown 131.0
2098 Female, age 72, unknown 127.0
2295 Male, age 66, both hemispheres 124.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 126.0
Samples: 159

Max nTPM: 211.0
Min nTPM: 80.2
Std nTPM: 21.4
Median nTPM: 124.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 211.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 194.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 193.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 179.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 170.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 165.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 164.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 159.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 159.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 157.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 157.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 154.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 154.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 154.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 152.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 152.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 148.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 147.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 147.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 146.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 145.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 145.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 144.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 144.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 142.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 142.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 141.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 140.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 140.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 139.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 137.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 136.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 136.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 136.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 135.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 135.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 134.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 133.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 133.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 132.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 132.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 131.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 131.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 131.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 130.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 130.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 130.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 130.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 129.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 129.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 129.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 129.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 128.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 128.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 128.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 128.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 127.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 127.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 126.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 126.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 126.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 126.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 126.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 125.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 125.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 124.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 124.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 124.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 124.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 123.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 123.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 123.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 123.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 123.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 122.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 122.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 122.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 121.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 121.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 120.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 120.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 120.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 119.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 119.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 118.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 118.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 118.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 117.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 117.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 117.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 116.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 115.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 115.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 114.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 114.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 114.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 114.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 113.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 113.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 113.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 112.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 111.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 109.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 108.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 108.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 106.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 106.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 106.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 106.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 106.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 105.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 105.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 105.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 105.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 104.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 104.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 103.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 102.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 101.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 101.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 97.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 97.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 96.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 96.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 96.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 96.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 93.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 89.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 87.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 86.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 86.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 83.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.5
FF:10181-103D1 60 years, female 35.3
FF:10159-103A6 76 years, female 29.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 237.8
Samples: 4

Max nTPM: 276.1
Min nTPM: 218.6
Sample A Female 218.6
Sample B Female 227.0
Sample C Male 276.1
Sample D Male 229.5
Ventral spinal cord
nTPM: 265.9
Samples: 4

Max nTPM: 280.7
Min nTPM: 226.5
Sample A Female 226.5
Sample B Female 277.9
Sample C Male 280.7
Sample D Male 278.3

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