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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1015.2 nTPM
FANTOM5:37.8 Scaled Tags Per Million
Pig:677.5 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1015.2
Sample id Sample description nTPM
Area postrema
nTPM: 924.8
2306 Male, age 80, both hemispheres 1338.2
2799 Male, age 61, both hemispheres 796.0
2054 Male, age 76, both hemispheres 640.2
Dorsal medullary reticular nucleus
nTPM: 674.4
2373 Male, age 61, both hemispheres 763.3
2040 Female, age 85, both hemispheres 643.6
2088 Male, age 76, both hemispheres 616.3
Dorsal motor vagal complex
nTPM: 762.4
2185 Male, age 76, both hemispheres 938.3
2797 Male, age 61, both hemispheres 911.6
2813 Female, age 72, unknown 840.4
2807 Female, age 85, both hemispheres 826.9
2133 Female, age 91, both hemispheres 694.8
2643 Male, age 74, both hemispheres 686.6
2000 Male, age 74, unknown 663.5
2844 Male, age 55, unknown 537.0
Gigantocellular reticular nuclei, medullary
nTPM: 786.5
2314 Male, age 61, both hemispheres 1117.8
2310 Male, age 80, both hemispheres 873.2
2387 Female, age 91, both hemispheres 777.9
2022 Male, age 76, right hemisphere 752.6
1876 Female, age 85, both hemispheres 660.5
2462 Male, age 74, both hemispheres 537.1
Gigantocellular reticular nuclei, pars
nTPM: 791.0
2330 Male, age 80, both hemispheres 1030.4
2336 Male, age 61, both hemispheres 939.0
2706 Male, age 80, both hemispheres 782.1
2084 Female, age 85, both hemispheres 668.8
2168 Male, age 76, both hemispheres 534.5
Inferior olive
nTPM: 862.9
2628 Female, age 91, both hemispheres 1091.3
2085 Female, age 85, both hemispheres 911.0
2178 Male, age 61, both hemispheres 899.0
2379 Male, age 80, both hemispheres 775.7
2563 Male, age 74, both hemispheres 637.3
Lateral medullary reticular nucleus
nTPM: 868.9
2374 Male, age 61, both hemispheres 1195.1
2190 Female, age 85, both hemispheres 857.7
2852 Male, age 80, both hemispheres 856.9
2804 Female, age 91, both hemispheres 826.2
2305 Male, age 74, both hemispheres 798.1
2044 Male, age 76, both hemispheres 679.2
Medial olivary nucleus
nTPM: 931.0
2851 Male, age 80, both hemispheres 1075.6
1943 Male, age 61, both hemispheres 949.6
2138 Female, age 91, both hemispheres 864.3
1962 Male, age 76, both hemispheres 834.5
Medial vestibular nucleus
nTPM: 761.1
2624 Male, age 61, both hemispheres 978.7
2803 Female, age 91, both hemispheres 910.8
2801 Male, age 74, both hemispheres 836.6
2093 Male, age 80, both hemispheres 712.8
2743 Female, age 85, both hemispheres 583.0
2134 Male, age 76, both hemispheres 544.8
Motor hypoglossal nucleus
nTPM: 804.5
2461 Male, age 61, both hemispheres 976.2
2182 Male, age 80, both hemispheres 878.1
2132 Female, age 85, both hemispheres 844.2
2125 Female, age 91, both hemispheres 783.6
2277 Male, age 76, both hemispheres 540.2
Nucleus ambiguus
nTPM: 770.1
2071 Male, age 76, both hemispheres 947.9
2096 Female, age 85, both hemispheres 592.2
Nucleus cuneatus
nTPM: 739.1
2808 Female, age 85, both hemispheres 985.3
2805 Female, age 91, both hemispheres 842.2
2381 Male, age 80, both hemispheres 815.1
2380 Male, age 80, both hemispheres 807.2
2376 Male, age 61, both hemispheres 669.5
2100 Male, age 76, both hemispheres 666.0
2564 Male, age 74, both hemispheres 659.6
2562 Male, age 61, both hemispheres 619.1
2131 Male, age 76, both hemispheres 587.7
Nucleus gracilis
nTPM: 1015.2
2299 Female, age 85, both hemispheres 1131.8
2382 Male, age 80, both hemispheres 1091.0
2627 Male, age 74, both hemispheres 822.9
Nucleus raphe obscurus
nTPM: 907.0
2845 Female, age 85, midline 984.6
2142 Male, age 76, midline 937.9
2800 Male, age 61, midline 798.5
Nucleus raphe pallidus
nTPM: 846.0
2145 Male, age 76, midline 937.4
1924 Male, age 61, midline 811.6
2183 Male, age 80, midline 788.9
Nucleus tractus solitarii
nTPM: 595.6
2191 Female, age 85, both hemispheres 745.1
2307 Male, age 80, both hemispheres 646.4
2144 Female, age 91, right hemisphere 505.2
2656 Male, age 76, both hemispheres 485.5
Parvicellular reticular nuclei
nTPM: 700.9
2095 Male, age 76, both hemispheres 768.6
2119 Male, age 80, both hemispheres 756.5
2558 Male, age 74, both hemispheres 577.7
Parvicellular reticular nuclei, medullary
nTPM: 728.9
2189 Female, age 91, both hemispheres 772.0
2181 Male, age 80, left hemisphere 741.4
2091 Female, age 85, both hemispheres 673.4
Peritrigeminal nucleus
nTPM: 766.7
2067 Female, age 85, both hemispheres 810.5
2136 Male, age 76, both hemispheres 775.9
2179 Male, age 61, both hemispheres 713.7
Prepositus hypoglossal nucleus
nTPM: 695.3
2855 Female, age 85, right hemisphere 740.7
2086 Male, age 80, both hemispheres 649.9
Spinal trigeminal nucleus, caudal
nTPM: 804.9
2312 Male, age 61, both hemispheres 893.6
2308 Male, age 80, both hemispheres 880.0
2390 Female, age 91, both hemispheres 829.4
2642 Male, age 74, both hemispheres 740.0
2447 Male, age 76, both hemispheres 681.5
Spinal trigeminal nucleus, interpolar
nTPM: 704.7
2389 Female, age 91, both hemispheres 812.5
2625 Male, age 61, both hemispheres 775.9
2033 Male, age 80, both hemispheres 667.3
2386 Female, age 85, both hemispheres 651.1
2066 Male, age 76, right hemisphere 616.8
Spinal vestibular nucleus
nTPM: 810.7
2796 Male, age 61, both hemispheres 1009.6
2806 Female, age 85, both hemispheres 849.9
2748 Male, age 76, both hemispheres 815.0
2186 Female, age 91, both hemispheres 770.5
2780 Male, age 80, both hemispheres 713.9
2384 Male, age 74, both hemispheres 705.2
Superior vestibular nucleus
nTPM: 706.2
2015 Male, age 80, both hemispheres 756.2
2061 Male, age 76, both hemispheres 691.3
2383 Male, age 74, both hemispheres 671.0
Ventral medullary reticular nucleus
nTPM: 737.0
2372 Male, age 61, both hemispheres 761.9
2060 Male, age 76, both hemispheres 712.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 838.1
2118 Male, age 80, both hemispheres 917.5
2180 Male, age 61, both hemispheres 913.0
2302 Female, age 91, both hemispheres 879.5
2741 Female, age 85, both hemispheres 740.8
1986 Male, age 76, both hemispheres 739.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 37.8
FF:10155-103A2 76 years, female 43.0
FF:10038-101F2 18-64 years, mixed 36.7
FF:10174-103C3 60 years, female 33.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

677.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 677.5
Samples: 4

Max nTPM: 764.7
Min nTPM: 592.7
Sample A Female 700.1
Sample B Female 592.7
Sample C Male 764.7
Sample D Male 652.5

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