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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:423.8 nTPM
GTEx:423.8 nTPM
FANTOM5:33.3 Scaled Tags Per Million
Pig:357.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 423.8
Samples: 105

Max nTPM: 591.9
Min nTPM: 314.6
Std nTPM: 58.1
Median nTPM:
126_1 63 years, male 591.9
137_1 83 years, male 582.8
162_1 79 years, female 554.8
42_1 85 years, male 552.5
218_1 71 years, female 545.6
117_1 61 years, male 541.2
145_1 84 years, male 539.5
17_1 71 years, male 534.3
35_1 74 years, female 521.0
315_1 62 years, female 515.5
265_1 87 years, male 502.1
386_1 76 years, male 501.5
495_1 57 years, female 501.0
163_1 78 years, male 490.1
384_1 83 years, male 482.3
518_1 75 years, female 482.3
4_1 88 years, female 480.2
6_1 73 years, female 477.6
237_1 82 years, male 473.4
353_1 82 years, female 471.9
109_1 81 years, female 464.2
499_1 55 years, female 464.2
2_1 77 years, female 459.3
377_1 82 years, female 453.2
379_1 60 years, male 452.0
375_1 74 years, female 451.5
115_1 83 years, male 449.7
173_1 67 years, male 447.3
18_1 88 years, male 447.0
308_1 70 years, female 446.6
99_1 64 years, male 441.9
43_1 64 years, female 441.2
319_1 81 years, male 440.2
311_1 78 years, male 438.2
89_1 63 years, male 437.1
266_1 85 years, male 436.9
415_1 77 years, female 436.0
149_1 88 years, male 435.6
293_1 68 years, female 434.2
526_1 61 years, male 432.2
356_1 87 years, female 431.0
120_1 70 years, female 430.0
9_1 66 years, female 428.0
351_1 91 years, male 426.6
491_1 89 years, female 426.4
350_1 84 years, female 425.8
490_1 67 years, female 422.0
447_1 81 years, male 421.7
468_1 89 years, male 421.6
503_1 68 years, male 418.9
317_1 60 years, male 418.3
394_1 75 years, female 416.6
142_1 61 years, female 416.5
355_1 70 years, female 416.4
354_1 81 years, female 416.2
466_1 57 years, female 414.9
452_1 88 years, female 414.3
246_1 77 years, male 414.1
396_1 62 years, male 413.8
119_1 70 years, female 412.0
501_1 88 years, male 411.9
139_1 64 years, female 411.3
517_1 88 years, male 406.7
314_1 67 years, male 406.6
335_1 73 years, female 405.6
177_1 74 years, male 402.5
243_1 75 years, male 402.2
32_1 67 years, male 400.2
189_1 76 years, male 400.1
322_1 76 years, male 399.7
254_1 77 years, female 399.3
292_1 71 years, male 394.6
313_1 79 years, female 393.9
251_1 78 years, male 391.1
288_1 66 years, female 391.0
376_1 75 years, female 388.7
307_1 66 years, female 388.5
349_1 83 years, male 388.3
81_1 67 years, male 386.5
153_1 70 years, female 385.6
291_1 76 years, male 384.0
217_1 76 years, male 383.5
389_1 86 years, female 383.5
41_1 94 years, female 383.1
347_1 72 years, male 377.1
404_1 82 years, female 372.7
264_1 73 years, female 371.5
286_1 68 years, female 370.1
172_1 72 years, female 369.9
321_1 62 years, female 367.6
506_1 65 years, male 363.9
295_1 61 years, female 363.0
316_1 62 years, male 362.1
324_1 76 years, male 360.5
348_1 84 years, male 359.0
414_1 84 years, female 349.7
320_1 89 years, female 348.2
318_1 68 years, male 339.2
352_1 62 years, male 337.1
229_1 69 years, female 333.5
425_1 59 years, female 325.0
480_1 63 years, male 324.1
405_1 91 years, male 323.0
406_1 79 years, male 318.8
413_1 59 years, female 314.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 33.3
FF:10030-101E3 24-65 years, mixed 33.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.3
Pig sample Sample description nTPM
Retina
nTPM: 357.3
Samples: 4

Max nTPM: 403.1
Min nTPM: 309.2
Sample A Female 334.4
Sample B Female 382.5
Sample C Male 403.1
Sample D Male 309.2

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