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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1235.6 nTPM
HPA Brain:859.6 nTPM
GTEx:1235.6 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:739.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

859.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 666.4
1981 Female, age 72, midline 697.4
2194 Female, age 79, both hemispheres 687.9
2048 Male, age 55, midline 676.5
2565 Male, age 75, midline 653.8
2816 Male, age 47, midline 616.2
Cervical spinal cord, dorsal horn
nTPM: 675.2
2296 Male, age 66, both hemispheres 727.6
2173 Female, age 72, unknown 726.3
2297 Male, age 75, both hemispheres 681.1
2069 Male, age 47, both hemispheres 673.9
1877 Male, age 55, unknown 641.7
2721 Male, age 90, both hemispheres 600.4
Cervical spinal cord, ventral horn
nTPM: 859.6
2809 Male, age 90, both hemispheres 1028.3
2480 Male, age 75, both hemispheres 942.2
2295 Male, age 66, both hemispheres 922.9
2068 Male, age 55, unknown 814.5
2098 Female, age 72, unknown 782.9
2820 Female, age 79, both hemispheres 667.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1235.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1235.6
Samples: 159

Max nTPM: 1885.6
Min nTPM: 501.8
Std nTPM: 268.7
Median nTPM: 1225.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1885.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1787.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1740.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1726.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1722.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1721.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1707.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1701.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1689.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1688.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1684.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1675.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1673.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1661.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1659.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1644.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1639.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1625.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1618.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1606.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1591.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1582.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1578.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1532.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1508.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1507.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1504.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1502.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1499.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1492.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1486.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1468.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1466.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1432.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1431.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1425.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1425.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1424.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1416.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1404.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1398.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1394.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1376.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1374.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1371.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1371.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1369.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1366.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1358.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1352.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1349.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1347.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1339.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1338.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1338.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1337.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1337.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1326.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1319.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1316.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1313.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1311.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1311.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1304.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1299.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1295.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1272.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1270.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1267.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1265.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1263.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1255.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1255.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1254.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1251.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1246.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1246.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1233.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1225.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1225.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1224.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1223.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1217.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1216.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1212.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1208.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1204.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1193.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1189.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1187.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1184.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1170.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1169.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1165.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1163.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1159.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1151.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1148.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1143.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1132.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1130.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1128.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1112.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1097.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1094.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1091.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1091.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1085.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1084.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1080.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1079.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1069.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1069.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1066.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1060.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1058.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1058.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1055.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1043.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1039.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1035.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1035.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1032.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1030.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1019.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1015.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1013.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1001.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 998.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 994.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 981.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 970.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 968.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 968.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 964.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 960.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 959.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 956.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 955.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 941.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 941.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 936.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 933.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 926.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 920.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 912.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 898.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 888.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 878.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 877.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 875.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 866.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 853.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 699.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 666.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 630.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 612.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 577.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 501.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 48.9
FF:10181-103D1 60 years, female 52.9
FF:10159-103A6 76 years, female 44.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

739.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 739.2
Samples: 4

Max nTPM: 849.2
Min nTPM: 638.8
Sample A Female 643.2
Sample B Female 825.6
Sample C Male 849.2
Sample D Male 638.8
Ventral spinal cord
nTPM: 679.1
Samples: 4

Max nTPM: 753.8
Min nTPM: 585.9
Sample A Female 585.9
Sample B Female 686.7
Sample C Male 689.9
Sample D Male 753.8

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