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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:331.1 nTPM
HPA Brain:77.9 nTPM
GTEx:331.1 nTPM
FANTOM5:774.5 Scaled Tags Per Million
Pig:387.1 nTPM
Mouse:917.3 nTPM
Allen mouse:4.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.9
Sample id Sample description nTPM
Amygdala
nTPM: 77.9
2814 Male, age 76, right hemisphere 101.6
2517 Female, age 94, left hemisphere 80.7
2514 Male, age 75, right hemisphere 79.2
1987 Female, age 91, left hemisphere 70.7
2695 Female, age 67, right hemisphere 57.1
Basal amygdala
nTPM: 66.0
2609 Male, age 75, right hemisphere 76.0
2110 Male, age 80, left hemisphere 73.3
2685 Female, age 94, left hemisphere 69.3
1955 Male, age 76, both hemispheres 67.5
2243 Female, age 91, right hemisphere 67.1
2827 Female, age 67, right hemisphere 42.8
Central amygdala
nTPM: 70.7
1905 Male, age 76, both hemispheres 91.3
2515 Male, age 75, right hemisphere 75.1
2826 Female, age 94, left hemisphere 71.6
2239 Male, age 80, left hemisphere 64.6
2701 Female, age 91, right hemisphere 50.7
Corticomedial amygdala
nTPM: 74.6
2429 Female, age 94, left hemisphere 97.6
2829 Male, age 80, left hemisphere 95.3
2428 Male, age 75, right hemisphere 76.4
2242 Female, age 91, right hemisphere 72.2
2240 Male, age 76, both hemispheres 63.7
2535 Female, age 67, right hemisphere 42.4
Lateral amygdala
nTPM: 65.4
2516 Male, age 75, right hemisphere 96.0
1883 Male, age 76, both hemispheres 77.7
2534 Female, age 94, left hemisphere 70.7
2255 Female, age 91, right hemisphere 51.4
2830 Female, age 67, right hemisphere 49.4
2256 Male, age 80, left hemisphere 47.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 331.1
Samples: 152

Max nTPM: 1503.3
Min nTPM: 52.3
Std nTPM: 165.1
Median nTPM: 302.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1503.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 906.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 867.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 803.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 754.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 692.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 671.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 640.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 556.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 530.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 526.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 520.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 514.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 498.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 481.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 469.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 465.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 465.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 459.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 447.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 441.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 440.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 437.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 426.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 414.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 410.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 409.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 408.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 402.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 400.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 398.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 397.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 390.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 386.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 384.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 380.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 375.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 374.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 374.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 371.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 371.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 368.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 366.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 365.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 363.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 360.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 357.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 355.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 353.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 349.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 348.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 346.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 345.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 344.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 342.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 338.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 338.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 337.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 336.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 334.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 334.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 331.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 330.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 328.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 322.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 322.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 318.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 318.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 318.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 315.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 312.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 308.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 307.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 306.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 306.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 304.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 300.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 296.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 295.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 294.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 294.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 293.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 291.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 288.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 285.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 284.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 281.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 278.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 276.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 273.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 273.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 272.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 270.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 266.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 266.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 266.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 265.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 264.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 262.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 259.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 256.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 255.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 254.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 252.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 251.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 249.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 243.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 243.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 243.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 243.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 240.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 240.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 237.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 237.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 235.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 232.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 231.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 230.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 230.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 227.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 218.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 217.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 216.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 214.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 211.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 206.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 206.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 205.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 203.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 202.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 197.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 195.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 194.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 189.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 188.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 185.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 185.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 184.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 182.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 178.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 177.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 169.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 168.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 167.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 165.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 159.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 154.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 153.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 136.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 52.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

774.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 774.5
FF:10151-102I7 76 years, female 774.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.1
Pig sample Sample description nTPM
Amygdala
nTPM: 387.1
Samples: 4

Max nTPM: 515.5
Min nTPM: 280.2
Sample A Female 515.5
Sample B Female 389.7
Sample C Male 363.0
Sample D Male 280.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 917.3
Samples: 4

Max nTPM: 993.6
Min nTPM: 873.2
Sample A Male 880.4
Sample B Male 922.0
Sample C Female 993.6
Sample D Female 873.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.9
69782139 Antisense, RP_050505_02_D07, Mouse strain C57BL/6J (56 days, male) 4.9

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