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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.0 nTPM
HPA Brain:89.4 nTPM
GTEx:126.0 nTPM
FANTOM5:517.0 Scaled Tags Per Million
Pig:544.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 74.3
1981 Female, age 72, midline 104.4
2565 Male, age 75, midline 71.4
2048 Male, age 55, midline 69.9
2194 Female, age 79, both hemispheres 64.8
2816 Male, age 47, midline 61.2
Cervical spinal cord, dorsal horn
nTPM: 89.4
2173 Female, age 72, unknown 117.7
2069 Male, age 47, both hemispheres 102.4
2296 Male, age 66, both hemispheres 88.6
1877 Male, age 55, unknown 84.3
2297 Male, age 75, both hemispheres 82.2
2721 Male, age 90, both hemispheres 61.1
Cervical spinal cord, ventral horn
nTPM: 77.5
2480 Male, age 75, both hemispheres 98.7
2098 Female, age 72, unknown 84.7
2068 Male, age 55, unknown 82.7
2809 Male, age 90, both hemispheres 75.4
2295 Male, age 66, both hemispheres 67.7
2820 Female, age 79, both hemispheres 55.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 126.0
Samples: 159

Max nTPM: 257.9
Min nTPM: 67.1
Std nTPM: 32.1
Median nTPM: 120.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 257.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 234.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 224.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 203.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 199.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 189.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 185.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 181.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 181.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 180.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 180.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 177.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 177.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 176.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 175.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 171.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 170.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 167.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 163.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 160.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 156.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 155.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 151.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 150.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 149.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 149.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 148.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 145.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 144.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 144.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 143.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 143.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 142.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 141.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 141.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 141.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 140.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 139.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 139.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 139.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 138.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 137.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 136.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 136.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 135.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 133.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 133.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 133.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 132.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 132.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 131.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 130.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 130.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 129.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 129.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 128.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 128.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 127.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 127.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 125.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 123.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 123.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 122.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 122.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 122.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 121.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 121.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 119.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 118.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 118.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 116.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 116.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 116.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 115.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 115.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 115.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 115.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 114.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 114.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 114.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 113.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 112.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 111.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 110.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 109.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 109.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 109.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 108.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 107.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 106.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 106.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 106.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 104.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 104.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 103.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 103.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 103.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 103.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 103.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 103.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 102.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 101.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 100.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 100.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 100.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 100.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 99.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 99.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 99.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 98.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 98.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 98.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 97.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 97.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 95.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 95.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 94.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 92.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 92.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 92.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 91.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 91.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 90.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 89.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 88.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 87.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 85.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 81.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 75.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 74.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 69.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

517.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 517.0
FF:10181-103D1 60 years, female 682.9
FF:10159-103A6 76 years, female 351.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 443.7
Samples: 4

Max nTPM: 476.6
Min nTPM: 396.8
Sample A Female 466.0
Sample B Female 476.6
Sample C Male 396.8
Sample D Male 435.5
Ventral spinal cord
nTPM: 544.3
Samples: 4

Max nTPM: 666.9
Min nTPM: 468.1
Sample A Female 495.9
Sample B Female 666.9
Sample C Male 546.2
Sample D Male 468.1

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