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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.6 nTPM
GTEx:124.6 nTPM
FANTOM5:279.5 Scaled Tags Per Million
Pig:302.4 nTPM
Mouse:1959.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 124.6
Samples: 105

Max nTPM: 193.7
Min nTPM: 70.6
Std nTPM: 21.7
Median nTPM:
153_1 70 years, female 193.7
162_1 79 years, female 171.1
386_1 76 years, male 168.4
6_1 73 years, female 164.1
321_1 62 years, female 161.6
377_1 82 years, female 161.2
229_1 69 years, female 159.0
322_1 76 years, male 158.4
120_1 70 years, female 155.9
126_1 63 years, male 153.3
246_1 77 years, male 151.2
115_1 83 years, male 149.8
4_1 88 years, female 149.1
375_1 74 years, female 148.9
316_1 62 years, male 148.5
142_1 61 years, female 148.2
319_1 81 years, male 147.9
17_1 71 years, male 147.6
18_1 88 years, male 146.0
518_1 75 years, female 144.9
217_1 76 years, male 144.2
425_1 59 years, female 143.9
243_1 75 years, male 143.4
35_1 74 years, female 140.8
324_1 76 years, male 140.6
404_1 82 years, female 140.4
335_1 73 years, female 140.1
396_1 62 years, male 139.9
2_1 77 years, female 137.4
352_1 62 years, male 137.1
9_1 66 years, female 135.4
266_1 85 years, male 135.4
480_1 63 years, male 134.9
43_1 64 years, female 134.2
468_1 89 years, male 134.2
379_1 60 years, male 134.1
145_1 84 years, male 133.4
109_1 81 years, female 132.5
405_1 91 years, male 130.9
355_1 70 years, female 130.8
526_1 61 years, male 130.1
81_1 67 years, male 129.6
389_1 86 years, female 129.5
139_1 64 years, female 128.0
466_1 57 years, female 127.7
394_1 75 years, female 126.6
406_1 79 years, male 126.3
350_1 84 years, female 125.7
99_1 64 years, male 125.5
265_1 87 years, male 125.3
237_1 82 years, male 125.2
320_1 89 years, female 125.2
189_1 76 years, male 125.0
376_1 75 years, female 124.3
177_1 74 years, male 124.2
415_1 77 years, female 123.5
447_1 81 years, male 123.1
117_1 61 years, male 122.7
354_1 81 years, female 122.5
503_1 68 years, male 121.0
384_1 83 years, male 120.3
347_1 72 years, male 120.2
499_1 55 years, female 120.0
149_1 88 years, male 116.2
251_1 78 years, male 116.2
313_1 79 years, female 115.8
517_1 88 years, male 115.7
32_1 67 years, male 115.6
506_1 65 years, male 115.5
163_1 78 years, male 114.9
349_1 83 years, male 114.7
172_1 72 years, female 114.4
119_1 70 years, female 113.9
286_1 68 years, female 113.4
501_1 88 years, male 108.6
311_1 78 years, male 107.9
318_1 68 years, male 107.5
137_1 83 years, male 107.3
348_1 84 years, male 106.3
173_1 67 years, male 106.2
356_1 87 years, female 106.1
315_1 62 years, female 105.9
254_1 77 years, female 105.6
414_1 84 years, female 105.4
353_1 82 years, female 105.3
292_1 71 years, male 104.9
317_1 60 years, male 103.4
491_1 89 years, female 101.0
264_1 73 years, female 100.2
291_1 76 years, male 99.8
293_1 68 years, female 99.1
490_1 67 years, female 98.9
218_1 71 years, female 98.8
295_1 61 years, female 98.4
307_1 66 years, female 96.9
413_1 59 years, female 96.7
452_1 88 years, female 96.7
89_1 63 years, male 96.2
495_1 57 years, female 94.7
288_1 66 years, female 94.0
351_1 91 years, male 93.1
42_1 85 years, male 91.5
314_1 67 years, male 87.3
308_1 70 years, female 83.0
41_1 94 years, female 70.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

279.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 279.5
FF:10030-101E3 24-65 years, mixed 279.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

302.4
Pig sample Sample description nTPM
Retina
nTPM: 302.4
Samples: 4

Max nTPM: 354.5
Min nTPM: 269.5
Sample A Female 269.5
Sample B Female 293.6
Sample C Male 354.5
Sample D Male 292.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1959.7
Mouse sample Sample description nTPM
Retina
nTPM: 1959.7
Samples: 4

Max nTPM: 2300.0
Min nTPM: 1661.9
Sample A Male 2114.7
Sample B Male 1762.0
Sample C Female 2300.0
Sample D Female 1661.9

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