We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
APOD
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • APOD
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:558.9 nTPM
HPA Brain:501.7 nTPM
GTEx:558.9 nTPM
FANTOM5:948.1 Scaled Tags Per Million
Pig:174.7 nTPM
Mouse:81.7 nTPM
Allen mouse:8.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

501.7
Sample id Sample description nTPM
Amygdala
nTPM: 501.7
2814 Male, age 76, right hemisphere 671.5
2695 Female, age 67, right hemisphere 584.1
2514 Male, age 75, right hemisphere 497.5
1987 Female, age 91, left hemisphere 431.3
2517 Female, age 94, left hemisphere 324.1
Basal amygdala
nTPM: 359.8
2110 Male, age 80, left hemisphere 581.8
1955 Male, age 76, both hemispheres 413.9
2609 Male, age 75, right hemisphere 351.5
2685 Female, age 94, left hemisphere 298.5
2827 Female, age 67, right hemisphere 275.2
2243 Female, age 91, right hemisphere 237.9
Central amygdala
nTPM: 404.5
1905 Male, age 76, both hemispheres 539.8
2239 Male, age 80, left hemisphere 466.3
2515 Male, age 75, right hemisphere 391.8
2701 Female, age 91, right hemisphere 350.0
2826 Female, age 94, left hemisphere 274.7
Corticomedial amygdala
nTPM: 347.1
2829 Male, age 80, left hemisphere 451.3
2429 Female, age 94, left hemisphere 398.1
2428 Male, age 75, right hemisphere 388.7
2240 Male, age 76, both hemispheres 386.3
2535 Female, age 67, right hemisphere 240.3
2242 Female, age 91, right hemisphere 217.8
Lateral amygdala
nTPM: 385.6
2516 Male, age 75, right hemisphere 485.7
1883 Male, age 76, both hemispheres 468.9
2256 Male, age 80, left hemisphere 393.8
2534 Female, age 94, left hemisphere 342.0
2830 Female, age 67, right hemisphere 323.9
2255 Female, age 91, right hemisphere 299.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

558.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 558.9
Samples: 152

Max nTPM: 1251.7
Min nTPM: 188.5
Std nTPM: 218.4
Median nTPM: 518.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1251.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1214.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1131.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1021.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1017.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1010.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 997.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 983.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 940.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 889.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 887.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 886.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 875.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 874.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 870.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 864.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 864.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 861.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 849.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 849.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 840.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 834.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 831.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 828.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 819.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 815.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 792.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 789.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 788.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 781.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 776.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 732.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 729.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 718.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 712.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 709.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 705.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 693.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 691.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 687.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 679.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 675.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 654.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 645.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 641.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 637.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 633.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 633.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 632.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 627.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 608.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 605.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 602.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 598.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 598.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 593.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 589.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 587.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 586.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 577.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 573.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 569.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 566.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 564.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 561.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 559.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 558.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 558.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 554.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 553.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 550.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 546.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 544.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 529.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 524.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 519.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 517.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 515.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 514.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 511.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 503.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 503.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 502.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 496.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 495.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 493.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 492.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 485.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 481.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 479.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 479.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 478.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 470.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 462.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 459.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 457.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 443.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 442.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 440.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 426.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 423.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 421.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 419.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 418.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 416.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 413.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 412.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 406.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 405.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 404.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 398.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 393.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 392.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 388.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 387.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 382.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 382.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 381.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 370.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 368.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 367.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 364.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 364.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 358.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 347.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 347.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 342.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 340.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 331.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 321.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 319.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 317.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 317.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 316.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 312.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 311.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 309.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 308.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 306.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 306.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 295.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 292.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 291.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 290.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 280.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 275.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 274.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 252.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 248.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 223.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 223.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 188.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

948.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 948.1
FF:10151-102I7 76 years, female 948.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.7
Pig sample Sample description nTPM
Amygdala
nTPM: 174.7
Samples: 4

Max nTPM: 288.4
Min nTPM: 89.8
Sample A Female 111.2
Sample B Female 288.4
Sample C Male 209.3
Sample D Male 89.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 81.7
Samples: 4

Max nTPM: 97.1
Min nTPM: 68.1
Sample A Male 78.5
Sample B Male 68.1
Sample C Female 97.1
Sample D Female 83.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.2
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 8.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org