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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:917.6 nTPM
FANTOM5:2334.7 Scaled Tags Per Million
Pig:2620.5 nTPM
Allen mouse:15.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.6
Sample id Sample description nTPM
Area postrema
nTPM: 514.9
2306 Male, age 80, both hemispheres 839.7
2054 Male, age 76, both hemispheres 399.7
2799 Male, age 61, both hemispheres 305.3
Dorsal medullary reticular nucleus
nTPM: 606.3
2373 Male, age 61, both hemispheres 737.9
2040 Female, age 85, both hemispheres 616.9
2088 Male, age 76, both hemispheres 464.1
Dorsal motor vagal complex
nTPM: 430.4
2185 Male, age 76, both hemispheres 667.8
2000 Male, age 74, unknown 521.4
2813 Female, age 72, unknown 517.3
2807 Female, age 85, both hemispheres 450.4
2133 Female, age 91, both hemispheres 412.2
2643 Male, age 74, both hemispheres 338.3
2844 Male, age 55, unknown 273.6
2797 Male, age 61, both hemispheres 262.3
Gigantocellular reticular nuclei, medullary
nTPM: 681.0
2314 Male, age 61, both hemispheres 1085.4
2387 Female, age 91, both hemispheres 831.8
1876 Female, age 85, both hemispheres 754.0
2310 Male, age 80, both hemispheres 522.8
2022 Male, age 76, right hemisphere 496.9
2462 Male, age 74, both hemispheres 395.4
Gigantocellular reticular nuclei, pars
nTPM: 575.6
2336 Male, age 61, both hemispheres 765.0
2706 Male, age 80, both hemispheres 632.9
2330 Male, age 80, both hemispheres 581.4
2084 Female, age 85, both hemispheres 509.4
2168 Male, age 76, both hemispheres 389.4
Inferior olive
nTPM: 808.3
2178 Male, age 61, both hemispheres 951.0
2628 Female, age 91, both hemispheres 814.9
2379 Male, age 80, both hemispheres 793.9
2563 Male, age 74, both hemispheres 786.1
2085 Female, age 85, both hemispheres 695.7
Lateral medullary reticular nucleus
nTPM: 796.0
2374 Male, age 61, both hemispheres 1100.6
2305 Male, age 74, both hemispheres 987.0
2852 Male, age 80, both hemispheres 776.5
2190 Female, age 85, both hemispheres 752.1
2804 Female, age 91, both hemispheres 638.0
2044 Male, age 76, both hemispheres 521.8
Medial olivary nucleus
nTPM: 856.9
1943 Male, age 61, both hemispheres 1063.7
1962 Male, age 76, both hemispheres 933.3
2851 Male, age 80, both hemispheres 815.7
2138 Female, age 91, both hemispheres 614.7
Medial vestibular nucleus
nTPM: 650.7
2801 Male, age 74, both hemispheres 961.5
2803 Female, age 91, both hemispheres 814.8
2624 Male, age 61, both hemispheres 799.5
2093 Male, age 80, both hemispheres 583.3
2743 Female, age 85, both hemispheres 449.5
2134 Male, age 76, both hemispheres 295.7
Motor hypoglossal nucleus
nTPM: 584.2
2132 Female, age 85, both hemispheres 711.9
2182 Male, age 80, both hemispheres 662.4
2125 Female, age 91, both hemispheres 662.0
2461 Male, age 61, both hemispheres 625.2
2277 Male, age 76, both hemispheres 259.3
Nucleus ambiguus
nTPM: 633.6
2071 Male, age 76, both hemispheres 856.9
2096 Female, age 85, both hemispheres 410.3
Nucleus cuneatus
nTPM: 577.6
2808 Female, age 85, both hemispheres 769.8
2380 Male, age 80, both hemispheres 727.0
2376 Male, age 61, both hemispheres 711.1
2381 Male, age 80, both hemispheres 703.5
2100 Male, age 76, both hemispheres 542.6
2564 Male, age 74, both hemispheres 511.6
2131 Male, age 76, both hemispheres 457.8
2805 Female, age 91, both hemispheres 394.8
2562 Male, age 61, both hemispheres 379.6
Nucleus gracilis
nTPM: 731.8
2382 Male, age 80, both hemispheres 884.3
2627 Male, age 74, both hemispheres 733.4
2299 Female, age 85, both hemispheres 577.6
Nucleus raphe obscurus
nTPM: 917.6
2845 Female, age 85, midline 1112.3
2800 Male, age 61, midline 929.7
2142 Male, age 76, midline 710.9
Nucleus raphe pallidus
nTPM: 717.3
2145 Male, age 76, midline 840.6
2183 Male, age 80, midline 659.8
1924 Male, age 61, midline 651.4
Nucleus tractus solitarii
nTPM: 306.2
2191 Female, age 85, both hemispheres 337.5
2656 Male, age 76, both hemispheres 300.3
2307 Male, age 80, both hemispheres 296.7
2144 Female, age 91, right hemisphere 290.5
Parvicellular reticular nuclei
nTPM: 507.3
2095 Male, age 76, both hemispheres 620.0
2119 Male, age 80, both hemispheres 526.0
2558 Male, age 74, both hemispheres 376.0
Parvicellular reticular nuclei, medullary
nTPM: 520.0
2189 Female, age 91, both hemispheres 585.9
2091 Female, age 85, both hemispheres 489.4
2181 Male, age 80, left hemisphere 484.9
Peritrigeminal nucleus
nTPM: 615.5
2179 Male, age 61, both hemispheres 649.7
2136 Male, age 76, both hemispheres 643.1
2067 Female, age 85, both hemispheres 553.6
Prepositus hypoglossal nucleus
nTPM: 605.1
2855 Female, age 85, right hemisphere 790.3
2086 Male, age 80, both hemispheres 420.0
Spinal trigeminal nucleus, caudal
nTPM: 591.2
2312 Male, age 61, both hemispheres 842.3
2308 Male, age 80, both hemispheres 583.8
2390 Female, age 91, both hemispheres 565.2
2642 Male, age 74, both hemispheres 485.0
2447 Male, age 76, both hemispheres 479.6
Spinal trigeminal nucleus, interpolar
nTPM: 501.5
2389 Female, age 91, both hemispheres 569.9
2625 Male, age 61, both hemispheres 545.9
2033 Male, age 80, both hemispheres 512.0
2386 Female, age 85, both hemispheres 501.4
2066 Male, age 76, right hemisphere 378.2
Spinal vestibular nucleus
nTPM: 637.5
2806 Female, age 85, both hemispheres 826.6
2748 Male, age 76, both hemispheres 693.7
2796 Male, age 61, both hemispheres 674.5
2186 Female, age 91, both hemispheres 603.6
2384 Male, age 74, both hemispheres 526.1
2780 Male, age 80, both hemispheres 500.8
Superior vestibular nucleus
nTPM: 512.9
2015 Male, age 80, both hemispheres 563.5
2383 Male, age 74, both hemispheres 501.7
2061 Male, age 76, both hemispheres 473.6
Ventral medullary reticular nucleus
nTPM: 705.8
2372 Male, age 61, both hemispheres 868.3
2060 Male, age 76, both hemispheres 543.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 645.1
2180 Male, age 61, both hemispheres 900.9
2118 Male, age 80, both hemispheres 675.2
2302 Female, age 91, both hemispheres 581.6
2741 Female, age 85, both hemispheres 537.7
1986 Male, age 76, both hemispheres 530.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2334.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2334.7
FF:10038-101F2 18-64 years, mixed 2453.1
FF:10174-103C3 60 years, female 2442.7
FF:10155-103A2 76 years, female 2108.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2620.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2620.5
Samples: 4

Max nTPM: 3284.6
Min nTPM: 1510.3
Sample A Female 2640.8
Sample B Female 1510.3
Sample C Male 3046.2
Sample D Male 3284.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 15.1
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 15.1

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