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S100A4
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  • S100A4
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:227.6 nTPM
HPA:108.5 nTPM
GTEx:227.6 nTPM
FANTOM5:60.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007973Antibody CAB002618Antibody CAB027387Antibody CAB058698Antibody CAB068227Antibody CAB068228
Glandular cells Not detectedNot detectedNot detectedNot detectedNot detectedNot detected













SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.5
overview
Male, age 65
Small intestine sample 232
nTPM: 72
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 94
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 126.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 141.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 227.6
Samples: 187

Max nTPM: 853.9
Min nTPM: 41.1
Std nTPM: 153.7
Median nTPM: 182.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 853.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 695.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 670.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 663.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 619.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 619.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 611.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 600.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 566.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 553.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 539.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 531.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 530.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 497.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 486.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 480.2
GTEX-1192X-2526-SM-59868 50-59 years, male 460.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 458.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 453.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 448.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 421.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 419.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 416.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 415.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 412.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 408.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 402.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 399.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 395.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 378.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 375.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 370.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 370.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 356.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 352.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 351.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 343.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 342.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 324.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 321.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 315.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 309.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 303.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 299.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 297.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 295.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 293.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 289.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 288.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 285.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 284.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 282.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 276.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 275.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 273.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 272.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 270.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 267.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 266.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 264.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 262.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 253.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 248.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 245.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 245.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 242.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 242.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 241.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 238.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 237.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 233.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 229.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 224.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 224.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 221.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 220.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 219.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 219.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 219.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 218.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 217.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 217.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 211.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 205.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 201.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 200.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 193.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 189.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 189.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 188.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 185.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 185.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 183.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 182.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 179.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 178.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 178.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 173.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 172.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 169.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 168.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 168.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 167.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 166.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 165.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 164.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 162.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 161.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 159.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 156.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 150.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 149.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 148.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 146.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 146.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 144.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 144.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 143.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 140.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 140.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 138.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 136.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 135.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 130.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 127.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 127.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 127.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 124.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 124.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 123.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 123.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 120.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 120.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 119.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 119.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 119.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 114.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 114.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 113.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 109.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 109.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 108.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 108.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 105.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 104.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 104.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 104.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 104.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 103.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 103.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 99.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 98.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 97.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 95.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 93.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 92.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 91.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 91.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 91.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 89.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 88.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 88.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 87.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 83.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 81.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 80.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 78.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 77.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 77.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 74.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 73.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 71.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 71.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 70.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 68.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 67.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 66.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 65.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 64.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 61.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 61.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 60.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 58.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 58.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 53.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 45.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 41.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

60.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 60.4
FF:10024-101D6 15,40,85 years, mixed 60.4

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