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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:343.7 nTPM
HPA:107.2 nTPM
GTEx:343.7 nTPM
FANTOM5:865.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001115Antibody HPA002925Antibody CAB000356
Endocrine cells --Not detected
Enterocytes --Not detected
Enterocytes - Microvilli --Not detected
Glandular cells Not detectedMedium-
Goblet cells --Not detected
Paneth cells --Not detected






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.2
overview
Male, age 65
Small intestine sample 232
nTPM: 46.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 106.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 143.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 132

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 343.7
Samples: 187

Max nTPM: 2325.1
Min nTPM: 36.1
Std nTPM: 505.5
Median nTPM: 120.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2325.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2258.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2045.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1975.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1910.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1906.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1872.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1847.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1811.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1811.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1730.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1690.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1609.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1415.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1391.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1281.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1266.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1247.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 983.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 965.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 952.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 952.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 885.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 734.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 723.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 720.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 714.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 672.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 642.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 633.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 609.4
GTEX-1192X-2526-SM-59868 50-59 years, male 571.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 532.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 523.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 487.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 480.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 462.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 432.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 428.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 412.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 410.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 397.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 358.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 298.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 296.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 294.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 292.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 279.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 264.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 257.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 254.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 252.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 250.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 246.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 240.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 231.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 227.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 223.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 211.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 211.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 209.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 199.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 189.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 188.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 184.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 174.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 158.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 156.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 155.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 153.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 149.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 141.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 139.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 137.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 135.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 134.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 133.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 132.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 131.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 131.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 130.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 130.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 129.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 127.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 127.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 126.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 125.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 124.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 124.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 123.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 123.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 122.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 121.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 120.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 119.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 119.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 118.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 117.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 116.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 115.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 115.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 114.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 114.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 112.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 111.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 111.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 110.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 109.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 109.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 109.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 108.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 107.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 103.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 103.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 102.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 101.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 100.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 99.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 98.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 98.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 98.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 96.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 96.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 94.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 94.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 94.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 93.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 93.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 93.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 92.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 91.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 91.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 91.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 91.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 90.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 89.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 88.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 88.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 87.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 85.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 84.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 84.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 84.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 83.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 83.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 82.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 82.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 81.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 81.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 81.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 80.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 80.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 80.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 79.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 79.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 78.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 78.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 77.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 74.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 74.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 73.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 73.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 73.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 72.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 72.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 70.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 70.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 69.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 68.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 68.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 67.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 66.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 65.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 63.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 60.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 59.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 57.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 56.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 56.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 54.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 54.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 54.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 52.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 49.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 48.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 44.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 36.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

865.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 865.0
FF:10024-101D6 15,40,85 years, mixed 865.0

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