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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:277.0 nTPM
GTEx:277.0 nTPM
FANTOM5:1394.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001115Antibody HPA002925Antibody CAB000356
Squamous epithelial cells Not detectedLowLow




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 277.0
Samples: 156

Max nTPM: 1667.8
Min nTPM: 23.0
Std nTPM: 284.2
Median nTPM: 175.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1667.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1295.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1143.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1141.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1079.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1047.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 971.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 968.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 848.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 822.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 806.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 783.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 782.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 779.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 729.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 697.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 667.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 657.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 570.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 543.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 538.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 525.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 523.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 518.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 506.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 504.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 497.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 478.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 475.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 465.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 440.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 391.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 387.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 361.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 359.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 356.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 356.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 352.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 342.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 337.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 324.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 319.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 307.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 301.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 293.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 288.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 287.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 283.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 280.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 270.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 265.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 260.6
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 256.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 250.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 249.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 248.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 244.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 237.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 235.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 233.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 229.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 228.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 226.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 224.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 212.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 208.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 199.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 197.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 197.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 195.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 190.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 190.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 189.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 189.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 183.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 181.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 180.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 177.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 173.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 172.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 166.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 161.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 161.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 158.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 156.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 156.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 154.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 151.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 149.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 147.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 145.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 144.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 143.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 142.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 136.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 134.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 131.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 130.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 125.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 125.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 124.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 117.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 115.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 115.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 113.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 111.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 110.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 108.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 107.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 107.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 104.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 104.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 104.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 103.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 102.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 95.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 95.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 94.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 93.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 91.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 87.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 83.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 83.5
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 78.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 76.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 75.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 71.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 71.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 71.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 69.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 69.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 64.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 64.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 61.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 60.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 58.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 57.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 55.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 55.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 54.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 54.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 54.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 53.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 52.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 49.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 49.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 47.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 46.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 45.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 44.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 41.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 39.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 33.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 31.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 30.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 23.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1394.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1394.6
FF:10204-103F6 68 years, female 1394.6

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