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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:67.8 nTPM
HPA Brain:354.8 nTPM
GTEx:67.8 nTPM
FANTOM5:529.2 Scaled Tags Per Million
Pig:225.2 nTPM
Mouse:218.7 nTPM
Allen mouse:21.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.8
Sample id Sample description nTPM
Amygdala
nTPM: 339.9
1987 Female, age 91, left hemisphere 373.9
2695 Female, age 67, right hemisphere 348.8
2514 Male, age 75, right hemisphere 343.2
2517 Female, age 94, left hemisphere 329.6
2814 Male, age 76, right hemisphere 304.0
Basal amygdala
nTPM: 350.1
2609 Male, age 75, right hemisphere 399.4
2243 Female, age 91, right hemisphere 394.2
2685 Female, age 94, left hemisphere 372.8
2110 Male, age 80, left hemisphere 329.8
1955 Male, age 76, both hemispheres 307.5
2827 Female, age 67, right hemisphere 296.6
Central amygdala
nTPM: 350.3
2826 Female, age 94, left hemisphere 402.4
2515 Male, age 75, right hemisphere 394.6
1905 Male, age 76, both hemispheres 325.7
2239 Male, age 80, left hemisphere 320.1
2701 Female, age 91, right hemisphere 308.8
Corticomedial amygdala
nTPM: 354.8
2242 Female, age 91, right hemisphere 403.7
2428 Male, age 75, right hemisphere 384.3
2829 Male, age 80, left hemisphere 378.0
2429 Female, age 94, left hemisphere 354.5
2535 Female, age 67, right hemisphere 308.0
2240 Male, age 76, both hemispheres 300.3
Lateral amygdala
nTPM: 316.7
2516 Male, age 75, right hemisphere 367.5
2534 Female, age 94, left hemisphere 331.6
1883 Male, age 76, both hemispheres 329.6
2255 Female, age 91, right hemisphere 309.9
2830 Female, age 67, right hemisphere 281.3
2256 Male, age 80, left hemisphere 280.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 67.8
Samples: 152

Max nTPM: 141.9
Min nTPM: 28.3
Std nTPM: 20.2
Median nTPM: 66.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 141.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 128.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 111.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 108.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 107.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 106.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 103.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 102.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 97.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 96.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 96.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 94.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 93.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 93.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 92.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 90.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 88.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 87.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 87.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 87.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 86.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 85.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 82.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 82.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 81.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 80.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 80.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 79.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 78.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 77.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 77.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 77.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 76.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 75.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 75.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 74.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 74.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 72.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 71.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 71.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 71.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 70.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 68.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 68.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 67.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 66.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 66.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 65.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 64.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 63.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 63.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 62.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 62.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 61.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 59.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 59.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 59.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 59.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 59.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 59.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 58.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 58.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 58.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 56.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 56.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 56.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 56.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 55.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 54.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 51.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 50.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 49.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 49.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 45.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 45.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 45.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 44.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 44.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 43.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 42.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 42.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 40.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 40.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 38.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 38.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 37.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 37.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 34.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 33.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 33.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 32.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 29.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 28.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

529.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 529.2
FF:10151-102I7 76 years, female 529.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.2
Pig sample Sample description nTPM
Amygdala
nTPM: 225.2
Samples: 4

Max nTPM: 292.6
Min nTPM: 157.3
Sample A Female 292.6
Sample B Female 157.3
Sample C Male 220.1
Sample D Male 230.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 218.7
Samples: 4

Max nTPM: 235.9
Min nTPM: 206.6
Sample A Male 235.9
Sample B Male 207.7
Sample C Female 206.6
Sample D Female 224.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.5
70596059 Antisense, RP_050628_04_A03, Mouse strain C57BL/6J (56 days, male) 24.4
69885690 Antisense, RP_050512_03_C04, Mouse strain C57BL/6J (56 days, male) 18.5

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