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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.2 nTPM
HPA Brain:378.0 nTPM
GTEx:55.2 nTPM
FANTOM5:391.7 Scaled Tags Per Million
Pig:231.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

378.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 364.5
1981 Female, age 72, midline 394.4
2565 Male, age 75, midline 370.3
2194 Female, age 79, both hemispheres 367.0
2048 Male, age 55, midline 350.8
2816 Male, age 47, midline 340.1
Cervical spinal cord, dorsal horn
nTPM: 328.8
2173 Female, age 72, unknown 412.7
2721 Male, age 90, both hemispheres 373.2
2296 Male, age 66, both hemispheres 307.3
2069 Male, age 47, both hemispheres 301.8
1877 Male, age 55, unknown 297.8
2297 Male, age 75, both hemispheres 280.0
Cervical spinal cord, ventral horn
nTPM: 378.0
2809 Male, age 90, both hemispheres 414.0
2098 Female, age 72, unknown 406.5
2295 Male, age 66, both hemispheres 398.0
2820 Female, age 79, both hemispheres 364.4
2068 Male, age 55, unknown 357.7
2480 Male, age 75, both hemispheres 327.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.2
Samples: 159

Max nTPM: 144.4
Min nTPM: 14.9
Std nTPM: 19.9
Median nTPM: 53.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 144.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 116.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 113.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 108.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 101.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 101.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 87.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 86.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 85.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 85.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 84.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 83.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 82.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 81.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 81.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 81.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 80.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 73.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 72.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 71.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 70.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 70.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 70.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 69.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 69.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 68.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 68.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 68.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 68.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 67.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 66.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 66.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 66.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 65.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 63.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 63.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 62.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 62.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 62.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 61.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 60.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 60.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 59.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 59.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 58.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 57.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 57.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 56.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 56.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 56.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 55.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 55.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 54.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 54.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 54.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 53.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 53.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 53.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 53.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 53.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 53.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 53.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 53.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 53.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 52.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 51.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 51.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 51.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 50.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 50.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 49.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 49.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 49.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 49.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 49.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 49.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 48.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 48.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 47.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 46.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 46.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 46.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 44.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 44.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 44.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 43.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 43.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 43.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 42.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 41.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 41.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 41.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 40.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 40.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 40.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 40.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 40.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 39.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 39.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 39.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 39.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 39.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 39.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 39.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 38.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 37.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 37.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 36.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 36.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 36.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 35.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 34.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 34.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 34.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 34.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 33.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 32.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 32.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 29.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 29.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 28.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 28.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 28.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 26.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 26.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 22.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 22.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 21.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 20.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 20.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 391.7
FF:10181-103D1 60 years, female 422.9
FF:10159-103A6 76 years, female 360.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 176.4
Samples: 4

Max nTPM: 202.2
Min nTPM: 135.6
Sample A Female 184.2
Sample B Female 135.6
Sample C Male 202.2
Sample D Male 183.5
Ventral spinal cord
nTPM: 231.7
Samples: 4

Max nTPM: 298.0
Min nTPM: 130.2
Sample A Female 266.8
Sample B Female 231.6
Sample C Male 298.0
Sample D Male 130.2

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