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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1019.8 nTPM
HPA Brain:381.7 nTPM
GTEx:1019.8 nTPM
FANTOM5:12.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

381.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 303.7
1981 Female, age 72, midline 373.2
2565 Male, age 75, midline 346.3
2048 Male, age 55, midline 285.3
2194 Female, age 79, both hemispheres 257.2
2816 Male, age 47, midline 256.6
Cervical spinal cord, dorsal horn
nTPM: 303.7
2173 Female, age 72, unknown 378.4
2069 Male, age 47, both hemispheres 368.5
2296 Male, age 66, both hemispheres 332.8
1877 Male, age 55, unknown 294.1
2721 Male, age 90, both hemispheres 238.5
2297 Male, age 75, both hemispheres 210.1
Cervical spinal cord, ventral horn
nTPM: 381.7
2098 Female, age 72, unknown 496.0
2809 Male, age 90, both hemispheres 477.4
2480 Male, age 75, both hemispheres 474.3
2295 Male, age 66, both hemispheres 373.2
2068 Male, age 55, unknown 274.0
2820 Female, age 79, both hemispheres 195.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1019.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1019.8
Samples: 159

Max nTPM: 2398.4
Min nTPM: 370.9
Std nTPM: 340.1
Median nTPM: 977.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2398.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2169.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2043.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1887.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1820.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1816.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1715.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1598.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1586.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1566.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1559.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1507.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1470.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1447.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1447.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1418.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1413.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1395.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1387.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1360.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1349.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1341.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1338.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1326.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1322.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1300.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1296.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1290.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1282.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1275.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1263.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1263.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1258.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1258.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1257.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1250.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1243.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1242.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1238.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1229.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1219.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1218.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1201.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1192.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1191.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1190.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1187.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1184.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1182.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1181.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1164.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1163.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1154.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1143.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1117.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1105.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1103.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1102.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1091.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1088.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1080.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1062.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1058.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1058.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1056.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1055.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1043.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1038.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1034.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1024.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1021.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1015.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1010.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1001.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1001.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 999.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 997.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 991.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 984.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 977.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 972.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 969.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 967.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 959.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 957.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 943.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 937.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 935.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 929.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 919.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 915.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 912.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 900.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 895.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 892.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 888.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 888.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 878.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 873.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 872.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 872.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 867.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 866.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 861.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 859.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 841.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 825.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 824.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 823.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 816.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 816.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 807.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 807.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 802.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 790.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 784.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 775.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 772.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 769.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 763.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 755.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 753.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 751.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 751.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 747.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 733.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 733.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 730.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 728.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 728.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 724.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 716.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 710.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 698.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 697.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 697.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 691.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 686.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 681.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 664.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 664.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 660.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 649.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 636.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 633.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 630.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 628.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 615.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 590.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 580.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 580.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 565.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 562.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 494.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 488.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 463.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 452.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 401.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 370.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 12.1
FF:10181-103D1 60 years, female 17.4
FF:10159-103A6 76 years, female 6.8

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