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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

69.823
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:46823.1 nTPM
FANTOM5:21634.2 Scaled Tags Per Million
Pig:25794.2 nTPM
Allen mouse:17.6 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA049222
Medulla oblongata mean intensity 69.823
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 64.581
Raphe magnus nucleus 34.624
Cochlear nucleus 38.523
Lateral paragigantocellular nucleus 53.276
Raphe pallidus nucleus 30.057
Facial nucleus 59.655
Hypoglossal nucleus 31.865
Ambiguus nucleus 69.282
External cuneate nucleus 41.501
Inferior olivary nucleus 69.823
Raphe obscures nucleus 63.346
Dorsal motor nucleus of vagus 60.564

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46823.1
Sample id Sample description nTPM
Area postrema
nTPM: 29037.3
2799 Male, age 61, both hemispheres 43765.5
2306 Male, age 80, both hemispheres 31623.7
2054 Male, age 76, both hemispheres 11722.6
Dorsal medullary reticular nucleus
nTPM: 27768.0
2373 Male, age 61, both hemispheres 31926.1
2088 Male, age 76, both hemispheres 30602.1
2040 Female, age 85, both hemispheres 20775.8
Dorsal motor vagal complex
nTPM: 27627.1
2797 Male, age 61, both hemispheres 81654.1
2807 Female, age 85, both hemispheres 30463.4
2185 Male, age 76, both hemispheres 28448.0
2643 Male, age 74, both hemispheres 20707.6
2000 Male, age 74, unknown 16416.8
2844 Male, age 55, unknown 16192.4
2133 Female, age 91, both hemispheres 14827.0
2813 Female, age 72, unknown 12307.4
Gigantocellular reticular nuclei, medullary
nTPM: 26471.3
2314 Male, age 61, both hemispheres 49101.1
2387 Female, age 91, both hemispheres 32572.5
2310 Male, age 80, both hemispheres 31097.0
1876 Female, age 85, both hemispheres 22159.8
2022 Male, age 76, right hemisphere 14113.5
2462 Male, age 74, both hemispheres 9783.9
Gigantocellular reticular nuclei, pars
nTPM: 27771.3
2330 Male, age 80, both hemispheres 34167.3
2706 Male, age 80, both hemispheres 33324.6
2336 Male, age 61, both hemispheres 30549.5
2084 Female, age 85, both hemispheres 24312.6
2168 Male, age 76, both hemispheres 16502.6
Inferior olive
nTPM: 29096.8
2628 Female, age 91, both hemispheres 39336.1
2379 Male, age 80, both hemispheres 33294.5
2178 Male, age 61, both hemispheres 28710.9
2085 Female, age 85, both hemispheres 26509.4
2563 Male, age 74, both hemispheres 17633.3
Lateral medullary reticular nucleus
nTPM: 29758.4
2852 Male, age 80, both hemispheres 35322.7
2804 Female, age 91, both hemispheres 34841.7
2374 Male, age 61, both hemispheres 32870.5
2190 Female, age 85, both hemispheres 29248.1
2305 Male, age 74, both hemispheres 23431.4
2044 Male, age 76, both hemispheres 22836.1
Medial olivary nucleus
nTPM: 34141.0
1962 Male, age 76, both hemispheres 47322.2
1943 Male, age 61, both hemispheres 32833.7
2851 Male, age 80, both hemispheres 28660.9
2138 Female, age 91, both hemispheres 27747.3
Medial vestibular nucleus
nTPM: 22665.2
2624 Male, age 61, both hemispheres 33531.3
2803 Female, age 91, both hemispheres 33189.5
2093 Male, age 80, both hemispheres 25755.6
2801 Male, age 74, both hemispheres 20843.1
2743 Female, age 85, both hemispheres 14504.1
2134 Male, age 76, both hemispheres 8167.6
Motor hypoglossal nucleus
nTPM: 24661.1
2182 Male, age 80, both hemispheres 37604.6
2132 Female, age 85, both hemispheres 31608.0
2125 Female, age 91, both hemispheres 27952.2
2461 Male, age 61, both hemispheres 18592.4
2277 Male, age 76, both hemispheres 7548.1
Nucleus ambiguus
nTPM: 31596.3
2071 Male, age 76, both hemispheres 40262.8
2096 Female, age 85, both hemispheres 22929.8
Nucleus cuneatus
nTPM: 38378.2
2805 Female, age 91, both hemispheres 59601.3
2380 Male, age 80, both hemispheres 44691.6
2808 Female, age 85, both hemispheres 44190.9
2381 Male, age 80, both hemispheres 42954.5
2376 Male, age 61, both hemispheres 37291.0
2100 Male, age 76, both hemispheres 35130.5
2562 Male, age 61, both hemispheres 29781.0
2564 Male, age 74, both hemispheres 26835.7
2131 Male, age 76, both hemispheres 24927.5
Nucleus gracilis
nTPM: 38197.7
2382 Male, age 80, both hemispheres 48867.1
2299 Female, age 85, both hemispheres 39731.0
2627 Male, age 74, both hemispheres 25995.0
Nucleus raphe obscurus
nTPM: 46823.1
2845 Female, age 85, midline 48975.1
2142 Male, age 76, midline 48776.7
2800 Male, age 61, midline 42717.5
Nucleus raphe pallidus
nTPM: 33689.4
2145 Male, age 76, midline 58752.5
2183 Male, age 80, midline 24588.5
1924 Male, age 61, midline 17727.3
Nucleus tractus solitarii
nTPM: 10378.8
2191 Female, age 85, both hemispheres 14047.1
2307 Male, age 80, both hemispheres 12716.6
2656 Male, age 76, both hemispheres 9449.7
2144 Female, age 91, right hemisphere 5301.8
Parvicellular reticular nuclei
nTPM: 28085.3
2095 Male, age 76, both hemispheres 38810.5
2119 Male, age 80, both hemispheres 27365.7
2558 Male, age 74, both hemispheres 18079.7
Parvicellular reticular nuclei, medullary
nTPM: 20023.2
2189 Female, age 91, both hemispheres 22929.1
2181 Male, age 80, left hemisphere 20168.5
2091 Female, age 85, both hemispheres 16972.0
Peritrigeminal nucleus
nTPM: 25594.7
2136 Male, age 76, both hemispheres 29592.2
2067 Female, age 85, both hemispheres 23857.2
2179 Male, age 61, both hemispheres 23334.7
Prepositus hypoglossal nucleus
nTPM: 21681.8
2855 Female, age 85, right hemisphere 32676.2
2086 Male, age 80, both hemispheres 10687.4
Spinal trigeminal nucleus, caudal
nTPM: 27921.3
2308 Male, age 80, both hemispheres 38482.5
2312 Male, age 61, both hemispheres 32391.3
2447 Male, age 76, both hemispheres 25768.3
2390 Female, age 91, both hemispheres 22197.5
2642 Male, age 74, both hemispheres 20767.2
Spinal trigeminal nucleus, interpolar
nTPM: 20516.3
2033 Male, age 80, both hemispheres 24491.8
2389 Female, age 91, both hemispheres 23654.5
2625 Male, age 61, both hemispheres 20197.6
2386 Female, age 85, both hemispheres 19007.0
2066 Male, age 76, right hemisphere 15230.6
Spinal vestibular nucleus
nTPM: 28474.7
2806 Female, age 85, both hemispheres 32566.1
2796 Male, age 61, both hemispheres 32357.2
2384 Male, age 74, both hemispheres 32336.6
2748 Male, age 76, both hemispheres 27430.4
2780 Male, age 80, both hemispheres 23552.4
2186 Female, age 91, both hemispheres 22605.3
Superior vestibular nucleus
nTPM: 17460.6
2015 Male, age 80, both hemispheres 23456.7
2061 Male, age 76, both hemispheres 15960.1
2383 Male, age 74, both hemispheres 12965.0
Ventral medullary reticular nucleus
nTPM: 29567.6
2372 Male, age 61, both hemispheres 32752.9
2060 Male, age 76, both hemispheres 26382.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 27409.6
2118 Male, age 80, both hemispheres 35458.8
2302 Female, age 91, both hemispheres 31791.1
2180 Male, age 61, both hemispheres 25568.3
1986 Male, age 76, both hemispheres 23881.2
2741 Female, age 85, both hemispheres 20348.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21634.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 21634.2
FF:10038-101F2 18-64 years, mixed 32755.8
FF:10155-103A2 76 years, female 18895.5
FF:10174-103C3 60 years, female 13251.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25794.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 25794.3
Samples: 4

Max nTPM: 31997.2
Min nTPM: 17248.6
Sample A Female 24082.7
Sample B Female 17248.6
Sample C Male 31997.2
Sample D Male 29848.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.6
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 22.2
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 13.0

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