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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36665.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 36665.6
2301
Female, age 85, both hemispheres
54919.0
2188
Female, age 91, both hemispheres
44741.8
2090
Male, age 80, both hemispheres
33725.7
1984
Male, age 76, both hemispheres
13275.7
Dorsal cochlear nucleus nTPM: 24751.5
2187
Female, age 91, both hemispheres
33937.2
2802
Male, age 74, right hemisphere
26233.4
2378
Male, age 80, both hemispheres
24630.7
2370
Male, age 61, both hemispheres
21837.8
2058
Male, age 76, both hemispheres
17118.6
Dorsal tegmental nucleus nTPM: 22128.6
2083
Male, age 80, both hemispheres
27696.0
2326
Male, age 74, both hemispheres
22690.0
1936
Male, age 76, left hemisphere
21358.4
2358
Male, age 61, both hemispheres
16770.2
Dorsolateral tegmental area nTPM: 21507.7
2654
Male, age 80, both hemispheres
30137.8
2751
Female, age 85, both hemispheres
28714.7
2337
Male, age 61, both hemispheres
26958.9
2360
Male, age 74, both hemispheres
11888.5
2141
Male, age 76, both hemispheres
9838.6
Kolliker-Fuse nucleus nTPM: 27494.8
2793
Female, age 91, left hemisphere
44705.5
2163
Male, age 80, both hemispheres
24801.7
2315
Male, age 76, right hemisphere
12977.1
Lateral lemniscal nuclei nTPM: 21823.9
2320
Female, age 91, left hemisphere
31972.8
2036
Male, age 80, both hemispheres
22713.5
2169
Male, age 76, both hemispheres
20040.9
2453
Male, age 74, right hemisphere
17932.3
2746
Female, age 85, left hemisphere
16460.2
Lateral parabrachial nucleus nTPM: 23274.3
2792
Male, age 76, both hemispheres
43783.3
2013
Male, age 80, both hemispheres
21729.9
2790
Male, age 61, both hemispheres
15481.6
2139
Female, age 85, right hemisphere
12102.2
Lateral vestibular nucleus nTPM: 30638.7
2311
Male, age 80, both hemispheres
37357.2
2184
Male, age 76, both hemispheres
23920.2
Locus coeruleus nTPM: 9214.5
2720
Male, age 74, both hemispheres
17279.3
2162
Male, age 80, both hemispheres
13432.4
2123
Female, age 91, both hemispheres
8458.7
2317
Female, age 72, unknown
7937.8
2788
Male, age 74, unknown
6720.5
2014
Male, age 55, unknown
6319.0
1980
Male, age 76, both hemispheres
4353.6
Medial parabrachial nucleus nTPM: 28240.5
2170
Female, age 91, both hemispheres
40030.4
2463
Female, age 85, right hemisphere
27335.6
2854
Male, age 80, both hemispheres
26904.7
2786
Male, age 76, both hemispheres
25656.3
2156
Male, age 61, both hemispheres
21275.5
Medial periolivary nuclei nTPM: 21818.5
2458
Female, age 91, both hemispheres
35753.4
2081
Male, age 80, both hemispheres
26966.9
2063
Male, age 76, both hemispheres
17836.2
2171
Female, age 85, both hemispheres
14455.0
2791
Male, age 74, right hemisphere
14081.1
Motor facial nucleus nTPM: 25315.3
2697
Female, age 85, both hemispheres
37946.0
2795
Female, age 91, both hemispheres
30339.8
2126
Male, age 61, both hemispheres
29125.7
2327
Male, age 80, both hemispheres
24713.1
2365
Male, age 74, right hemisphere
15085.1
2062
Male, age 76, both hemispheres
14682.1
Motor trigeminal nucleus nTPM: 30867.3
2321
Female, age 91, both hemispheres
48973.4
2309
Male, age 76, both hemispheres
32341.8
2335
Male, age 61, both hemispheres
27285.9
2079
Male, age 80, both hemispheres
23399.1
2560
Male, age 74, both hemispheres
22336.2
Nuclei of the trapezoid body nTPM: 21692.5
2166
Male, age 80, both hemispheres
32920.2
2368
Female, age 91, both hemispheres
28631.1
2159
Male, age 61, both hemispheres
19367.7
1983
Male, age 76, both hemispheres
16579.3
2735
Female, age 85, both hemispheres
10963.9
Nucleus raphe magnus nTPM: 18125.5
2328
Male, age 80, both hemispheres
26344.8
2459
Female, age 91, both hemispheres
25630.7
2051
Male, age 76, both hemispheres
21765.6
2455
Male, age 74, both hemispheres
15470.2
2172
Female, age 85, both hemispheres
10230.5
2160
Male, age 61, both hemispheres
9311.2
Paramedian reticular nucleus nTPM: 24921.3
2052
Male, age 76, both hemispheres
36223.5
2057
Male, age 80, both hemispheres
22609.8
2313
Male, age 61, both hemispheres
21778.4
2050
Female, age 85, both hemispheres
19073.3
Pedunculopontine tegmental nucleus nTPM: 18553.3
2334
Male, age 80, both hemispheres
22172.8
2338
Male, age 61, both hemispheres
20964.9
1921
Female, age 85, both hemispheres
12522.2
Pontine nuclei nTPM: 21734.6
2319
Female, age 91, both hemispheres
42049.8
2115
Male, age 80, left hemisphere
27206.7
1968
Male, age 76, left hemisphere
22462.1
2454
Male, age 74, left hemisphere
22253.6
2109
Female, age 72, unknown
21106.0
1863
Male, age 55, unknown
17064.9
2787
Female, age 85, both hemispheres
12410.9
2727
Male, age 61, right hemisphere
9323.1
Pontine raphe nucleus nTPM: 12589.3
2122
Female, age 85, midline
14238.0
2853
Male, age 76, midline
10940.7
Posteroventral cochlear nucleus nTPM: 34385.4
2135
Female, age 91, both hemispheres
53900.4
2341
Male, age 80, both hemispheres
46138.9
2371
Male, age 61, both hemispheres
30678.0
2070
Male, age 76, both hemispheres
23662.9
2752
Female, age 85, both hemispheres
17546.9
Principal sensory trigeminal nucleus nTPM: 22888.2
2367
Female, age 91, left hemisphere
35473.6
2324
Male, age 76, both hemispheres
25021.0
2008
Male, age 80, left hemisphere
16155.6
2158
Male, age 61, both hemispheres
14902.4
Reticular pontine nucleus, caudal nTPM: 26265.4
2457
Female, age 91, both hemispheres
30963.4
2559
Male, age 74, both hemispheres
27209.8
2092
Male, age 76, both hemispheres
24947.8
2332
Male, age 80, right hemisphere
21940.4
Reticular pontine nucleus, oral nTPM: 24436.7
2366
Female, age 91, both hemispheres
40966.4
2167
Male, age 76, both hemispheres
22593.5
1939
Male, age 80, both hemispheres
22203.5
2012
Female, age 85, both hemispheres
18956.0
2361
Male, age 74, both hemispheres
17464.0
Reticulotegmental nucleus nTPM: 26292.6
2322
Female, age 91, both hemispheres
33266.6
2333
Male, age 80, both hemispheres
27398.8
2452
Male, age 74, both hemispheres
24107.4
2325
Male, age 76, both hemispheres
20397.6
Spinal trigeminal nucleus, oral nTPM: 19078.6
2164
Male, age 80, both hemispheres
27921.1
1978
Male, age 76, both hemispheres
15971.2
2737
Female, age 85, both hemispheres
13343.6
Subcoeruleus area nTPM: 22441.8
2369
Female, age 85, left hemisphere
32833.9
2089
Male, age 76, left hemisphere
23465.6
1958
Male, age 80, both hemispheres
20685.8
2451
Male, age 74, both hemispheres
20411.9
2323
Female, age 91, left hemisphere
14812.0
Superior olive nTPM: 26279.2
2561
Female, age 91, both hemispheres
36850.5
2020
Male, age 76, both hemispheres
35129.5
2329
Male, age 80, right hemisphere
31264.2
1875
Female, age 85, both hemispheres
15118.5
2364
Male, age 74, right hemisphere
13033.3
Ventral periolivary nuclei nTPM: 25479.2
2794
Female, age 91, left hemisphere
32998.2
2023
Male, age 76, both hemispheres
32942.1
2165
Male, age 80, both hemispheres
22580.3
2130
Female, age 85, both hemispheres
13396.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 21256.6
2456
Female, age 91, both hemispheres
31241.7
2161
Male, age 80, both hemispheres
24101.5
1959
Male, age 76, both hemispheres
21879.2
2840
Female, age 85, both hemispheres
20796.0
2359
Male, age 61, both hemispheres
14805.0
2449
Male, age 74, both hemispheres
14716.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14913.9
Pig sample
Sample description
nTPM
Pons nTPM: 14913.9
Samples: 4
Max nTPM: 25790.7
Min nTPM: 7918.2
Sample A
Female
7918.2
Sample B
Female
8713.5
Sample C
Male
17233.1
Sample D
Male
25790.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
