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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:84477.2 nTPM
HPA Brain:31401.8 nTPM
GTEx:84477.2 nTPM
FANTOM5:29492.7 Scaled Tags Per Million
Pig:41834.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31401.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 19502.7
2565 Male, age 75, midline 24334.9
2816 Male, age 47, midline 22791.9
2048 Male, age 55, midline 17399.9
1981 Female, age 72, midline 16966.0
2194 Female, age 79, both hemispheres 16020.6
Cervical spinal cord, dorsal horn
nTPM: 16601.5
2296 Male, age 66, both hemispheres 27257.0
2173 Female, age 72, unknown 24310.5
1877 Male, age 55, unknown 16066.6
2069 Male, age 47, both hemispheres 13190.0
2297 Male, age 75, both hemispheres 9584.4
2721 Male, age 90, both hemispheres 9200.4
Cervical spinal cord, ventral horn
nTPM: 31401.8
2480 Male, age 75, both hemispheres 51005.0
2809 Male, age 90, both hemispheres 39602.8
2295 Male, age 66, both hemispheres 28294.8
2068 Male, age 55, unknown 26293.2
2820 Female, age 79, both hemispheres 25453.3
2098 Female, age 72, unknown 17761.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84477.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 84477.2
Samples: 159

Max nTPM: 262746.7
Min nTPM: 14294.5
Std nTPM: 43851.8
Median nTPM: 75426.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 262746.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 237254.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 235974.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 197139.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 177268.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 176732.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 174203.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 167538.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 161301.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 160818.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 154682.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 151131.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 150023.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 144246.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 142598.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 139419.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 139075.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 137089.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 135696.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 134482.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133658.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132759.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 131866.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 129997.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 128438.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 128201.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127526.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 127486.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 126590.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 123717.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121411.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119376.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 118408.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 115631.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 114481.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 113939.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 113335.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 112396.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111211.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 106364.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 105150.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 101776.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 100874.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 100816.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 100025.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 99965.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 99071.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 99045.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 96604.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 96320.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96310.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96289.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 96156.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95504.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 95213.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94886.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 93612.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 92307.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 90084.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 89392.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 88063.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 87840.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 87330.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 86671.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 86338.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 85758.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84650.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 83115.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 82446.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 82431.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 80807.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 79981.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 78782.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 77448.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77024.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77016.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 76997.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76532.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 75737.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 75426.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 74709.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 74301.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 74265.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74209.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 73254.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 71554.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 70482.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 70424.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68536.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 68114.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 67290.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 66836.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 65543.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 65045.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63065.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 62814.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 62727.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 62290.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 61550.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 61052.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 61031.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 60874.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 59938.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 59746.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 59242.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 58890.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 58392.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58094.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 57979.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56885.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56808.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 56237.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 55891.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 55282.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 54882.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54245.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 54042.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 53950.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 52756.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 52746.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 52346.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 51810.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 51763.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 50572.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 50367.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 50193.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 49701.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49112.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 48771.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 48247.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48242.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 47498.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 46960.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 46728.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 46692.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 45829.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 43984.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 43616.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 43574.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 42636.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41600.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 41538.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 40072.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 39862.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 39801.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 38730.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 35730.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 33452.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 33166.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 31735.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 31115.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 30879.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 26208.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 25927.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 25601.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 22448.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 20449.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 18586.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 14294.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29492.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29492.7
FF:10159-103A6 76 years, female 33650.0
FF:10181-103D1 60 years, female 25335.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41834.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 31640.7
Samples: 4

Max nTPM: 33192.3
Min nTPM: 27997.6
Sample A Female 27997.6
Sample B Female 32848.3
Sample C Male 33192.3
Sample D Male 32524.5
Ventral spinal cord
nTPM: 41834.5
Samples: 4

Max nTPM: 59904.9
Min nTPM: 33873.3
Sample A Female 35068.1
Sample B Female 38491.5
Sample C Male 33873.3
Sample D Male 59904.9

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