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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

129.291
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:22589.1 nTPM
FANTOM5:24272.2 Scaled Tags Per Million
Pig:15005.1 nTPM
Mouse:7686.9 nTPM
Allen mouse:14.6 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA049222
Thalamus mean intensity 129.291
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 71.207
Parafascicular thalamic nucleus 105.954
Pregeniculate nucleus 63.146
Stria terminalis 123.734
Zona incerta 119.949
Anterodorsal thalamic nucleus 93.608
Reticular thalamic nucleus 104.979
Vental anterior thalamic nucleus -
Medial habenular nucleus 100.263
Laterodorsal thalamic area 104.706
Paraventricular thalamic nucleus 129.291
Central medial thalamic area 110.919
Ventral lateral thalamic area -
Ventral medial thalamic area 103.237
Lateral habenulal nucleus 117.454
Ventral posterior thalamus 100.225
Anterior pretactal nucleus 68.160
Retromammillary nucleus 66.964

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22589.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 11192.3
2032 Female, age 42, unknown 15674.9
2497 Male, age 66, unknown 12185.3
2396 Male, age 61, right hemisphere 5716.6
Centromedial thalamic nucleus
nTPM: 21747.2
2279 Female, age 85, left hemisphere 30470.6
2401 Male, age 76, right hemisphere 13023.9
Habenula
nTPM: 3844.9
2252 Male, age 62, unknown 4569.2
1957 Male, age 80, both hemispheres 3907.0
2276 Male, age 66, unknown 3613.7
2203 Male, age 61, left hemisphere 3289.6
Lateral geniculate body
nTPM: 17680.4
2575 Female, age 94, right hemisphere 26437.4
2841 Male, age 80, both hemispheres 24879.6
2659 Male, age 66, unknown 24368.4
2035 Female, age 72, unknown 18266.2
2857 Male, age 74, right hemisphere 14953.3
2399 Male, age 61, left hemisphere 11797.5
1953 Male, age 62, unknown 11686.3
2106 Female, age 67, right hemisphere 9054.2
Lateral thalamic nuclei
nTPM: 15876.9
2577 Male, age 74, both hemispheres 25703.5
2661 Female, age 72, unknown 21602.0
2573 Female, age 94, left hemisphere 19237.8
2765 Female, age 67, both hemispheres 8559.4
1903 Male, age 76, left hemisphere 4281.8
Medial dorsal thalamic nucleus
nTPM: 10011.5
2572 Female, age 94, right hemisphere 27831.3
2660 Female, age 72, unknown 23027.1
2576 Male, age 74, both hemispheres 14827.8
1859 Male, age 76, both hemispheres 9894.6
2283 Male, age 80, right hemisphere 8899.3
1930 Female, age 42, unknown 8233.3
2492 Male, age 75, right hemisphere 7285.7
1810 Male, age 48, unknown 6407.4
2039 Female, age 72, unknown 5722.6
2026 Male, age 62, unknown 5272.7
2498 Male, age 66, unknown 5216.2
2402 Female, age 67, both hemispheres 4762.2
1971 Male, age 61, right hemisphere 2769.7
Medial geniculate body
nTPM: 14899.8
2571 Male, age 75, right hemisphere 28489.3
2217 Female, age 72, unknown 17919.6
2207 Male, age 80, right hemisphere 16223.4
2650 Female, age 94, left hemisphere 16056.4
2657 Male, age 74, right hemisphere 11711.2
2049 Male, age 76, both hemispheres 8613.3
1811 Female, age 42, unknown 5285.7
Nucleus reuniens
nTPM: 22146.8
2210 Female, age 85, left hemisphere 44591.7
2205 Male, age 80, left hemisphere 17999.4
2212 Female, age 67, left hemisphere 3849.4
Nucleus rhomboideus
nTPM: 20847.7
2280 Female, age 85, left hemisphere 54624.9
2206 Male, age 80, both hemispheres 5853.8
2213 Female, age 67, left hemisphere 2064.5
Posterior thalamic nucleus
nTPM: 19874.3
2649 Female, age 94, both hemispheres 52652.1
2655 Male, age 74, right hemisphere 12974.1
2266 Male, age 76, right hemisphere 9995.0
2495 Female, age 67, right hemisphere 3875.8
Pulvinar
nTPM: 11440.9
2724 Male, age 74, right hemisphere 15058.3
1899 Female, age 42, unknown 13093.2
1932 Male, age 80, right hemisphere 12929.6
2398 Male, age 61, left hemisphere 12465.1
2496 Female, age 67, right hemisphere 10891.1
1929 Male, age 48, unknown 10834.3
1972 Male, age 62, unknown 10454.8
2214 Male, age 76, right hemisphere 10093.7
2582 Female, age 72, unknown 9444.3
2499 Male, age 66, unknown 9145.1
Subthalamic nucleus
nTPM: 22589.1
2056 Female, age 72, unknown 29389.3
2658 Male, age 74, both hemispheres 27963.6
2124 Male, age 62, unknown 26770.9
2282 Male, age 61, both hemispheres 25830.7
2216 Male, age 48, unknown 25732.9
2275 Male, age 66, unknown 24239.6
2779 Female, age 42, unknown 16164.8
2406 Female, age 72, unknown 4621.1
Ventral posterolateral thalamic nucleus
nTPM: 17336.6
2581 Female, age 72, unknown 29083.9
2578 Male, age 74, both hemispheres 26004.3
2740 Male, age 76, right hemisphere 19363.3
2570 Male, age 75, right hemisphere 13462.2
2397 Male, age 61, right hemisphere 10552.0
2197 Male, age 80, both hemispheres 5553.7
Ventral posteromedial thalamic nucleus
nTPM: 12425.2
2653 Male, age 74, both hemispheres 26619.9
2281 Male, age 75, right hemisphere 13000.3
2127 Male, age 76, right hemisphere 11726.2
2758 Male, age 80, both hemispheres 6297.1
2202 Male, age 61, left hemisphere 4482.2
Ventral thalamic nuclei
nTPM: 17566.3
2858 Female, age 72, unknown 26120.2
2580 Male, age 66, unknown 26024.5
2291 Female, age 72, unknown 21734.8
2652 Male, age 74, left hemisphere 19831.4
1845 Male, age 48, unknown 17008.6
1860 Male, age 76, both hemispheres 14504.3
2204 Male, age 80, both hemispheres 14176.5
2285 Male, age 62, unknown 9730.5
1912 Female, age 42, unknown 8966.2
Zona incerta
nTPM: 19846.4
2822 Male, age 74, right hemisphere 35527.5
2663 Female, age 72, unknown 22473.8
2403 Male, age 62, unknown 17808.1
2215 Male, age 66, unknown 15398.5
2208 Male, age 80, right hemisphere 8024.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24272.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 24272.2
FF:10154-103A1 76 years, female 24272.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15005.1
Pig sample Sample description nTPM
Thalamus
nTPM: 15005.1
Samples: 4

Max nTPM: 35996.3
Min nTPM: 5202.7
Sample A Female 5202.7
Sample B Female 7812.8
Sample C Male 11008.7
Sample D Male 35996.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7686.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 7687.0
Samples: 4

Max nTPM: 9480.8
Min nTPM: 6048.1
Sample A Male 8274.9
Sample B Male 6048.1
Sample C Female 9480.8
Sample D Female 6944.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 14.6
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 18.2
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 11.1

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