PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		69.823
Mouse brain, Intensity
Ponsi 		122.255
RNA expressioni
HPA Brain:46823.1 nTPM
FANTOM5:24292.6 Scaled Tags Per Million
Pig:25794.2 nTPM
Mouse:12924.6 nTPM
Allen mouse:17.6 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA049222
Medulla oblongata mean intensity 69.823
intensityi
FRONT BACK
Nucleus of the solitary tract 64.581
Raphe magnus nucleus 34.624
Cochlear nucleus 38.523
Lateral paragigantocellular nucleus 53.276
Raphe pallidus nucleus 30.057
Facial nucleus 59.655
Hypoglossal nucleus 31.865
Ambiguus nucleus 69.282
External cuneate nucleus 41.501
Inferior olivary nucleus 69.823
Raphe obscures nucleus 63.346
Dorsal motor nucleus of vagus 60.564
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 71.428
Parabrachial nucleus 88.152
Principle sensory trigeminal nucleus 63.376
Locus coeruleus 122.255
Pontine nucleus 56.010
Vestibular nucleus 58.757
Pontine reticular nucleus, oral 59.928
Lateral lemniscus 26.992
Superior paraolivary nucleus 62.675

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 46823.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 36665.6
2301 Female, age 85, both hemispheres 54919.0
2188 Female, age 91, both hemispheres 44741.8
2090 Male, age 80, both hemispheres 33725.7
1984 Male, age 76, both hemispheres 13275.7
Area postrema
nTPM: 29037.3
2799 Male, age 61, both hemispheres 43765.5
2306 Male, age 80, both hemispheres 31623.7
2054 Male, age 76, both hemispheres 11722.6
Dorsal cochlear nucleus
nTPM: 24751.5
2187 Female, age 91, both hemispheres 33937.2
2802 Male, age 74, right hemisphere 26233.4
2378 Male, age 80, both hemispheres 24630.7
2370 Male, age 61, both hemispheres 21837.8
2058 Male, age 76, both hemispheres 17118.6
Dorsal medullary reticular nucleus
nTPM: 27768.0
2373 Male, age 61, both hemispheres 31926.1
2088 Male, age 76, both hemispheres 30602.1
2040 Female, age 85, both hemispheres 20775.8
Dorsal motor vagal complex
nTPM: 27627.1
2797 Male, age 61, both hemispheres 81654.1
2807 Female, age 85, both hemispheres 30463.4
2185 Male, age 76, both hemispheres 28448.0
2643 Male, age 74, both hemispheres 20707.6
2000 Male, age 74, unknown 16416.8
2844 Male, age 55, unknown 16192.4
2133 Female, age 91, both hemispheres 14827.0
2813 Female, age 72, unknown 12307.4
Dorsal tegmental nucleus
nTPM: 22128.6
2083 Male, age 80, both hemispheres 27696.0
2326 Male, age 74, both hemispheres 22690.0
1936 Male, age 76, left hemisphere 21358.4
2358 Male, age 61, both hemispheres 16770.2
Dorsolateral tegmental area
nTPM: 21507.7
2654 Male, age 80, both hemispheres 30137.8
2751 Female, age 85, both hemispheres 28714.7
2337 Male, age 61, both hemispheres 26958.9
2360 Male, age 74, both hemispheres 11888.5
2141 Male, age 76, both hemispheres 9838.6
Gigantocellular reticular nuclei, medullary
nTPM: 26471.3
2314 Male, age 61, both hemispheres 49101.1
2387 Female, age 91, both hemispheres 32572.5
2310 Male, age 80, both hemispheres 31097.0
1876 Female, age 85, both hemispheres 22159.8
2022 Male, age 76, right hemisphere 14113.5
2462 Male, age 74, both hemispheres 9783.9
Gigantocellular reticular nuclei, pars
nTPM: 27771.3
2330 Male, age 80, both hemispheres 34167.3
2706 Male, age 80, both hemispheres 33324.6
2336 Male, age 61, both hemispheres 30549.5
2084 Female, age 85, both hemispheres 24312.6
2168 Male, age 76, both hemispheres 16502.6
Inferior olive
nTPM: 29096.8
2628 Female, age 91, both hemispheres 39336.1
2379 Male, age 80, both hemispheres 33294.5
2178 Male, age 61, both hemispheres 28710.9
2085 Female, age 85, both hemispheres 26509.4
2563 Male, age 74, both hemispheres 17633.3
Kolliker-Fuse nucleus
nTPM: 27494.8
2793 Female, age 91, left hemisphere 44705.5
2163 Male, age 80, both hemispheres 24801.7
2315 Male, age 76, right hemisphere 12977.1
Lateral lemniscal nuclei
nTPM: 21823.9
2320 Female, age 91, left hemisphere 31972.8
2036 Male, age 80, both hemispheres 22713.5
2169 Male, age 76, both hemispheres 20040.9
2453 Male, age 74, right hemisphere 17932.3
2746 Female, age 85, left hemisphere 16460.2
Lateral medullary reticular nucleus
nTPM: 29758.4
2852 Male, age 80, both hemispheres 35322.7
2804 Female, age 91, both hemispheres 34841.7
2374 Male, age 61, both hemispheres 32870.5
2190 Female, age 85, both hemispheres 29248.1
2305 Male, age 74, both hemispheres 23431.4
2044 Male, age 76, both hemispheres 22836.1
Lateral parabrachial nucleus
nTPM: 23274.3
2792 Male, age 76, both hemispheres 43783.3
2013 Male, age 80, both hemispheres 21729.9
2790 Male, age 61, both hemispheres 15481.6
2139 Female, age 85, right hemisphere 12102.2
Lateral vestibular nucleus
nTPM: 30638.7
2311 Male, age 80, both hemispheres 37357.2
2184 Male, age 76, both hemispheres 23920.2
Locus coeruleus
nTPM: 9214.5
2720 Male, age 74, both hemispheres 17279.3
2162 Male, age 80, both hemispheres 13432.4
2123 Female, age 91, both hemispheres 8458.7
2317 Female, age 72, unknown 7937.8
2788 Male, age 74, unknown 6720.5
2014 Male, age 55, unknown 6319.0
1980 Male, age 76, both hemispheres 4353.6
Medial olivary nucleus
nTPM: 34141.0
1962 Male, age 76, both hemispheres 47322.2
1943 Male, age 61, both hemispheres 32833.7
2851 Male, age 80, both hemispheres 28660.9
2138 Female, age 91, both hemispheres 27747.3
Medial parabrachial nucleus
nTPM: 28240.5
2170 Female, age 91, both hemispheres 40030.4
2463 Female, age 85, right hemisphere 27335.6
2854 Male, age 80, both hemispheres 26904.7
2786 Male, age 76, both hemispheres 25656.3
2156 Male, age 61, both hemispheres 21275.5
Medial periolivary nuclei
nTPM: 21818.5
2458 Female, age 91, both hemispheres 35753.4
2081 Male, age 80, both hemispheres 26966.9
2063 Male, age 76, both hemispheres 17836.2
2171 Female, age 85, both hemispheres 14455.0
2791 Male, age 74, right hemisphere 14081.1
Medial vestibular nucleus
nTPM: 22665.2
2624 Male, age 61, both hemispheres 33531.3
2803 Female, age 91, both hemispheres 33189.5
2093 Male, age 80, both hemispheres 25755.6
2801 Male, age 74, both hemispheres 20843.1
2743 Female, age 85, both hemispheres 14504.1
2134 Male, age 76, both hemispheres 8167.6
Motor facial nucleus
nTPM: 25315.3
2697 Female, age 85, both hemispheres 37946.0
2795 Female, age 91, both hemispheres 30339.8
2126 Male, age 61, both hemispheres 29125.7
2327 Male, age 80, both hemispheres 24713.1
2365 Male, age 74, right hemisphere 15085.1
2062 Male, age 76, both hemispheres 14682.1
Motor hypoglossal nucleus
nTPM: 24661.1
2182 Male, age 80, both hemispheres 37604.6
2132 Female, age 85, both hemispheres 31608.0
2125 Female, age 91, both hemispheres 27952.2
2461 Male, age 61, both hemispheres 18592.4
2277 Male, age 76, both hemispheres 7548.1
Motor trigeminal nucleus
nTPM: 30867.3
2321 Female, age 91, both hemispheres 48973.4
2309 Male, age 76, both hemispheres 32341.8
2335 Male, age 61, both hemispheres 27285.9
2079 Male, age 80, both hemispheres 23399.1
2560 Male, age 74, both hemispheres 22336.2
Nuclei of the trapezoid body
nTPM: 21692.5
2166 Male, age 80, both hemispheres 32920.2
2368 Female, age 91, both hemispheres 28631.1
2159 Male, age 61, both hemispheres 19367.7
1983 Male, age 76, both hemispheres 16579.3
2735 Female, age 85, both hemispheres 10963.9
Nucleus ambiguus
nTPM: 31596.3
2071 Male, age 76, both hemispheres 40262.8
2096 Female, age 85, both hemispheres 22929.8
Nucleus cuneatus
nTPM: 38378.2
2805 Female, age 91, both hemispheres 59601.3
2380 Male, age 80, both hemispheres 44691.6
2808 Female, age 85, both hemispheres 44190.9
2381 Male, age 80, both hemispheres 42954.5
2376 Male, age 61, both hemispheres 37291.0
2100 Male, age 76, both hemispheres 35130.5
2562 Male, age 61, both hemispheres 29781.0
2564 Male, age 74, both hemispheres 26835.7
2131 Male, age 76, both hemispheres 24927.5
Nucleus gracilis
nTPM: 38197.7
2382 Male, age 80, both hemispheres 48867.1
2299 Female, age 85, both hemispheres 39731.0
2627 Male, age 74, both hemispheres 25995.0
Nucleus raphe magnus
nTPM: 18125.5
2328 Male, age 80, both hemispheres 26344.8
2459 Female, age 91, both hemispheres 25630.7
2051 Male, age 76, both hemispheres 21765.6
2455 Male, age 74, both hemispheres 15470.2
2172 Female, age 85, both hemispheres 10230.5
2160 Male, age 61, both hemispheres 9311.2
Nucleus raphe obscurus
nTPM: 46823.1
2845 Female, age 85, midline 48975.1
2142 Male, age 76, midline 48776.7
2800 Male, age 61, midline 42717.5
Nucleus raphe pallidus
nTPM: 33689.4
2145 Male, age 76, midline 58752.5
2183 Male, age 80, midline 24588.5
1924 Male, age 61, midline 17727.3
Nucleus tractus solitarii
nTPM: 10378.8
2191 Female, age 85, both hemispheres 14047.1
2307 Male, age 80, both hemispheres 12716.6
2656 Male, age 76, both hemispheres 9449.7
2144 Female, age 91, right hemisphere 5301.8
Paramedian reticular nucleus
nTPM: 24921.3
2052 Male, age 76, both hemispheres 36223.5
2057 Male, age 80, both hemispheres 22609.8
2313 Male, age 61, both hemispheres 21778.4
2050 Female, age 85, both hemispheres 19073.3
Parvicellular reticular nuclei
nTPM: 28085.3
2095 Male, age 76, both hemispheres 38810.5
2119 Male, age 80, both hemispheres 27365.7
2558 Male, age 74, both hemispheres 18079.7
Parvicellular reticular nuclei, medullary
nTPM: 20023.2
2189 Female, age 91, both hemispheres 22929.1
2181 Male, age 80, left hemisphere 20168.5
2091 Female, age 85, both hemispheres 16972.0
Pedunculopontine tegmental nucleus
nTPM: 18553.3
2334 Male, age 80, both hemispheres 22172.8
2338 Male, age 61, both hemispheres 20964.9
1921 Female, age 85, both hemispheres 12522.2
Peritrigeminal nucleus
nTPM: 25594.7
2136 Male, age 76, both hemispheres 29592.2
2067 Female, age 85, both hemispheres 23857.2
2179 Male, age 61, both hemispheres 23334.7
Pontine nuclei
nTPM: 21734.6
2319 Female, age 91, both hemispheres 42049.8
2115 Male, age 80, left hemisphere 27206.7
1968 Male, age 76, left hemisphere 22462.1
2454 Male, age 74, left hemisphere 22253.6
2109 Female, age 72, unknown 21106.0
1863 Male, age 55, unknown 17064.9
2787 Female, age 85, both hemispheres 12410.9
2727 Male, age 61, right hemisphere 9323.1
Pontine raphe nucleus
nTPM: 12589.3
2122 Female, age 85, midline 14238.0
2853 Male, age 76, midline 10940.7
Posteroventral cochlear nucleus
nTPM: 34385.4
2135 Female, age 91, both hemispheres 53900.4
2341 Male, age 80, both hemispheres 46138.9
2371 Male, age 61, both hemispheres 30678.0
2070 Male, age 76, both hemispheres 23662.9
2752 Female, age 85, both hemispheres 17546.9
Prepositus hypoglossal nucleus
nTPM: 21681.8
2855 Female, age 85, right hemisphere 32676.2
2086 Male, age 80, both hemispheres 10687.4
Principal sensory trigeminal nucleus
nTPM: 22888.2
2367 Female, age 91, left hemisphere 35473.6
2324 Male, age 76, both hemispheres 25021.0
2008 Male, age 80, left hemisphere 16155.6
2158 Male, age 61, both hemispheres 14902.4
Reticular pontine nucleus, caudal
nTPM: 26265.4
2457 Female, age 91, both hemispheres 30963.4
2559 Male, age 74, both hemispheres 27209.8
2092 Male, age 76, both hemispheres 24947.8
2332 Male, age 80, right hemisphere 21940.4
Reticular pontine nucleus, oral
nTPM: 24436.7
2366 Female, age 91, both hemispheres 40966.4
2167 Male, age 76, both hemispheres 22593.5
1939 Male, age 80, both hemispheres 22203.5
2012 Female, age 85, both hemispheres 18956.0
2361 Male, age 74, both hemispheres 17464.0
Reticulotegmental nucleus
nTPM: 26292.6
2322 Female, age 91, both hemispheres 33266.6
2333 Male, age 80, both hemispheres 27398.8
2452 Male, age 74, both hemispheres 24107.4
2325 Male, age 76, both hemispheres 20397.6
Spinal trigeminal nucleus, caudal
nTPM: 27921.3
2308 Male, age 80, both hemispheres 38482.5
2312 Male, age 61, both hemispheres 32391.3
2447 Male, age 76, both hemispheres 25768.3
2390 Female, age 91, both hemispheres 22197.5
2642 Male, age 74, both hemispheres 20767.2
Spinal trigeminal nucleus, interpolar
nTPM: 20516.3
2033 Male, age 80, both hemispheres 24491.8
2389 Female, age 91, both hemispheres 23654.5
2625 Male, age 61, both hemispheres 20197.6
2386 Female, age 85, both hemispheres 19007.0
2066 Male, age 76, right hemisphere 15230.6
Spinal trigeminal nucleus, oral
nTPM: 19078.6
2164 Male, age 80, both hemispheres 27921.1
1978 Male, age 76, both hemispheres 15971.2
2737 Female, age 85, both hemispheres 13343.6
Spinal vestibular nucleus
nTPM: 28474.7
2806 Female, age 85, both hemispheres 32566.1
2796 Male, age 61, both hemispheres 32357.2
2384 Male, age 74, both hemispheres 32336.6
2748 Male, age 76, both hemispheres 27430.4
2780 Male, age 80, both hemispheres 23552.4
2186 Female, age 91, both hemispheres 22605.3
Subcoeruleus area
nTPM: 22441.8
2369 Female, age 85, left hemisphere 32833.9
2089 Male, age 76, left hemisphere 23465.6
1958 Male, age 80, both hemispheres 20685.8
2451 Male, age 74, both hemispheres 20411.9
2323 Female, age 91, left hemisphere 14812.0
Superior olive
nTPM: 26279.2
2561 Female, age 91, both hemispheres 36850.5
2020 Male, age 76, both hemispheres 35129.5
2329 Male, age 80, right hemisphere 31264.2
1875 Female, age 85, both hemispheres 15118.5
2364 Male, age 74, right hemisphere 13033.3
Superior vestibular nucleus
nTPM: 17460.6
2015 Male, age 80, both hemispheres 23456.7
2061 Male, age 76, both hemispheres 15960.1
2383 Male, age 74, both hemispheres 12965.0
Ventral medullary reticular nucleus
nTPM: 29567.6
2372 Male, age 61, both hemispheres 32752.9
2060 Male, age 76, both hemispheres 26382.3
Ventral periolivary nuclei
nTPM: 25479.2
2794 Female, age 91, left hemisphere 32998.2
2023 Male, age 76, both hemispheres 32942.1
2165 Male, age 80, both hemispheres 22580.3
2130 Female, age 85, both hemispheres 13396.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 27409.6
2118 Male, age 80, both hemispheres 35458.8
2302 Female, age 91, both hemispheres 31791.1
2180 Male, age 61, both hemispheres 25568.3
1986 Male, age 76, both hemispheres 23881.2
2741 Female, age 85, both hemispheres 20348.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 21256.6
2456 Female, age 91, both hemispheres 31241.7
2161 Male, age 80, both hemispheres 24101.5
1959 Male, age 76, both hemispheres 21879.2
2840 Female, age 85, both hemispheres 20796.0
2359 Male, age 61, both hemispheres 14805.0
2449 Male, age 74, both hemispheres 14716.4

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24292.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 23437.8
FF:10182-103D2 60 years, female 27176.2
FF:10165-103B3 76 years, female 19699.4
Medulla oblongata
Scaled Tags Per Million: 21634.2
FF:10038-101F2 18-64 years, mixed 32755.8
FF:10155-103A2 76 years, female 18895.5
FF:10174-103C3 60 years, female 13251.2
Pons
Scaled Tags Per Million: 24292.6
FF:10033-101E6 18-54 years, mixed 24292.6

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 25794.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 25794.3
Samples: 4

Max nTPM: 31997.2
Min nTPM: 17248.6
Sample A Female 24082.7
Sample B Female 17248.6
Sample C Male 31997.2
Sample D Male 29848.5
Pons
nTPM: 14913.9
Samples: 4

Max nTPM: 25790.7
Min nTPM: 7918.2
Sample A Female 7918.2
Sample B Female 8713.5
Sample C Male 17233.1
Sample D Male 25790.7

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 12924.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 12924.6
Samples: 4

Max nTPM: 14376.1
Min nTPM: 10359.5
Sample A Male 12774.5
Sample B Male 10359.5
Sample C Female 14376.1
Sample D Female 14188.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 17.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.6
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 22.2
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 13.0
Pons
Expression energy: 16.2
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 20.5
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 11.9

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