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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:365.8 nTPM
HPA Brain:756.4 nTPM
GTEx:365.8 nTPM
FANTOM5:1030.0 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

756.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 632.0
2048 Male, age 55, midline 665.2
2565 Male, age 75, midline 659.8
1981 Female, age 72, midline 627.0
2194 Female, age 79, both hemispheres 621.4
2816 Male, age 47, midline 586.6
Cervical spinal cord, dorsal horn
nTPM: 756.4
2297 Male, age 75, both hemispheres 940.2
1877 Male, age 55, unknown 786.8
2069 Male, age 47, both hemispheres 736.0
2173 Female, age 72, unknown 724.5
2721 Male, age 90, both hemispheres 696.6
2296 Male, age 66, both hemispheres 654.0
Cervical spinal cord, ventral horn
nTPM: 733.0
2480 Male, age 75, both hemispheres 965.9
2809 Male, age 90, both hemispheres 766.8
2820 Female, age 79, both hemispheres 755.0
2295 Male, age 66, both hemispheres 749.1
2068 Male, age 55, unknown 597.1
2098 Female, age 72, unknown 564.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 365.8
Samples: 159

Max nTPM: 648.1
Min nTPM: 210.1
Std nTPM: 68.7
Median nTPM: 359.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 648.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 625.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 587.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 585.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 576.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 550.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 478.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 465.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 457.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 457.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 450.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 449.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 448.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 440.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 438.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 437.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 430.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 429.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 424.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 423.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 422.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 415.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 414.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 413.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 411.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 411.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 410.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 409.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 408.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 408.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 405.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 405.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 404.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 402.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 402.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 402.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 401.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 400.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 399.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 399.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 398.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 398.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 395.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 395.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 395.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 395.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 394.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 394.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 392.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 391.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 391.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 390.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 390.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 389.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 389.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 388.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 388.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 386.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 383.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 381.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 380.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 379.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 377.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 375.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 375.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 371.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 370.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 370.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 370.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 370.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 369.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 369.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 366.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 366.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 364.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 364.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 364.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 362.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 361.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 359.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 357.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 355.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 354.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 354.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 353.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 353.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 352.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 351.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 349.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 348.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 348.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 348.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 347.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 347.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 346.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 346.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 345.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 345.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 344.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 344.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 343.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 343.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 342.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 342.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 342.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 341.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 340.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 339.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 339.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 338.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 337.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 336.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 335.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 333.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 331.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 330.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 330.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 329.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 324.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 324.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 324.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 322.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 322.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 320.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 320.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 319.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 318.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 316.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 315.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 314.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 309.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 309.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 307.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 301.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 301.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 300.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 300.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 298.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 298.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 293.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 292.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 291.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 287.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 286.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 285.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 284.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 282.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 277.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 273.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 265.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 262.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 261.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 256.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 254.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 250.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 246.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 246.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 224.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 210.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1030.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1030.0
FF:10181-103D1 60 years, female 1152.2
FF:10159-103A6 76 years, female 907.9

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