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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
WHITE MATTER - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1200.6 nTPM
FANTOM5:1273.4 Scaled Tags Per Million
Mouse:1104.5 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1200.6
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 789.8
1920 Male, age 76, both hemispheres 789.8
Anterior funiculus (white matter)
nTPM: 676.8
2193 Male, age 75, both hemispheres 817.6
2819 Male, age 47, both hemispheres 816.2
2818 Female, age 79, both hemispheres 565.9
2734 Male, age 80, both hemispheres 507.5
Area striata (white matter)
nTPM: 730.8
2258 Female, age 91, left hemisphere 730.8
Cerebellar white matter
nTPM: 542.6
2105 Male, age 74, right hemisphere 622.3
2174 Male, age 61, right hemisphere 593.6
1837 Male, age 76, left hemisphere 527.0
1931 Female, age 91, left hemisphere 522.0
2773 Female, age 85, right hemisphere 500.5
1864 Male, age 80, left hemisphere 490.2
Corpus callosum, genu (white matter)
nTPM: 720.9
1885 Female, age 94, left hemisphere 1072.8
1886 Female, age 67, right hemisphere 779.0
1934 Male, age 61, right hemisphere 662.7
2771 Male, age 75, left hemisphere 650.4
1849 Female, age 91, right hemisphere 582.4
1887 Male, age 76, left hemisphere 577.9
Corpus callosum, splenium (white matter)
nTPM: 698.6
2238 Female, age 94, right hemisphere 919.8
2847 Female, age 67, right hemisphere 808.5
2104 Male, age 75, left hemisphere 559.4
1946 Male, age 76, left hemisphere 506.8
Dorsal funiculus (white matter)
nTPM: 585.1
2812 Male, age 66, both hemispheres 696.1
2128 Male, age 75, both hemispheres 695.5
2810 Male, age 90, both hemispheres 563.5
2817 Male, age 47, both hemispheres 513.9
2064 Female, age 79, both hemispheres 456.4
Lateral funiculus (white matter)
nTPM: 583.2
2192 Male, age 75, both hemispheres 634.2
2099 Male, age 90, both hemispheres 604.7
2094 Female, age 79, both hemispheres 560.2
2294 Male, age 66, both hemispheres 533.8
Occipital cortex (white matter)
nTPM: 822.3
2257 Female, age 67, both hemispheres 848.2
2259 Male, age 75, midline 796.4
Parahippocampal cortex (white matter)
nTPM: 856.3
2157 Female, age 91, both hemispheres 856.3
Parieto-temporal junction (white matter)
nTPM: 651.1
1935 Female, age 94, right hemisphere 1092.9
1999 Female, age 67, right hemisphere 701.5
2469 Male, age 75, right hemisphere 608.7
2774 Male, age 61, right hemisphere 552.1
2770 Female, age 91, right hemisphere 479.3
2121 Male, age 76, left hemisphere 472.1
Somatomor cortex, precentral gyrus (white matter)
nTPM: 1063.9
2439 Male, age 75, right hemisphere 1063.9
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 1200.6
2623 Male, age 75, right hemisphere 1200.6
Temporal white matter
nTPM: 556.6
2523 Female, age 94, left hemisphere 866.3
2254 Male, age 75, right hemisphere 653.4
2736 Female, age 91, right hemisphere 534.4
1801 Male, age 76, left hemisphere 449.8
2524 Female, age 85, left hemisphere 279.0

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1273.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 1273.4
FF:10042-101F6 24-68 years, mixed 1273.4

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1104.5
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 1104.5
Samples: 3

Max nTPM: 1193.5
Min nTPM: 1038.2
Sample A Male 1038.2
Sample B Male 1081.8
Sample D Female 1193.5

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