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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
129417.3
nTPM
HPA Brain:
104313.1
nTPM
GTEx:
129417.3
nTPM
Pig:
100120.5
nTPM
Mouse:
36197.7
nTPM
Allen mouse:
19.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069328
Antibody CAB016241
Glial cells
Medium
Medium
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104313.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 103092.6
2621
Female, age 67, right hemisphere
156727.9
1855
Male, age 76, left hemisphere
115632.0
2529
Female, age 94, left hemisphere
109753.7
1911
Female, age 85, right hemisphere
83653.6
2148
Female, age 91, left hemisphere
83540.6
1898
Male, age 80, left hemisphere
69247.5
Dentate gyrus nTPM: 89684.9
2530
Female, age 94, left hemisphere
143221.2
2531
Female, age 67, both hemispheres
132864.5
2246
Female, age 85, both hemispheres
78879.0
2010
Male, age 76, both hemispheres
75381.2
1927
Female, age 91, both hemispheres
56045.3
2528
Male, age 74, both hemispheres
51718.0
Entorhinal gyrus nTPM: 77725.6
2686
Male, age 75, right hemisphere
139535.9
2613
Female, age 94, left hemisphere
110030.1
1938
Female, age 85, left hemisphere
61600.3
1787
Male, age 76, left hemisphere
57036.9
2764
Male, age 80, right hemisphere
49726.9
2117
Female, age 91, right hemisphere
48423.6
Hippocampus, CA1 nTPM: 68277.7
2527
Male, age 74, both hemispheres
85342.7
2749
Male, age 80, left hemisphere
72497.1
2045
Male, age 76, both hemispheres
71948.8
1873
Female, age 85, both hemispheres
68198.7
2082
Female, age 91, right hemisphere
43401.4
Hippocampus, CA2 nTPM: 72198.9
2437
Female, age 94, left hemisphere
119159.8
1892
Male, age 76, both hemispheres
81761.2
1963
Male, age 80, left hemisphere
81224.2
2113
Female, age 91, right hemisphere
53640.3
1940
Female, age 85, left hemisphere
51144.3
2249
Male, age 74, both hemispheres
46263.6
Hippocampus, CA3 nTPM: 104313.1
2861
Female, age 67, both hemispheres
255093.9
1867
Male, age 76, both hemispheres
83946.0
2620
Female, age 94, left hemisphere
82018.6
2137
Male, age 80, left hemisphere
79802.8
2436
Male, age 74, both hemispheres
64560.3
1891
Female, age 85, both hemispheres
60456.8
Parahippocampal cortex nTPM: 83088.8
2622
Female, age 67, right hemisphere
137202.5
2692
Male, age 74, both hemispheres
107395.0
2245
Female, age 91, both hemispheres
97155.5
2532
Female, age 72, left hemisphere
88571.1
2018
Male, age 76, both hemispheres
87875.2
2693
Female, age 94, both hemispheres
82355.7
2250
Female, age 67, right hemisphere
78359.2
1933
Female, age 85, both hemispheres
56444.0
1850
Male, age 80, both hemispheres
53632.1
1990
Female, age 91, right hemisphere
41898.1
Perirhinal gyrus nTPM: 52973.2
2848
Male, age 76, right hemisphere
60699.7
1841
Female, age 85, right hemisphere
58736.6
2521
Female, age 94, right hemisphere
52907.8
1847
Female, age 91, left hemisphere
49669.0
1794
Male, age 80, right hemisphere
42853.0
Subiculum nTPM: 74288.6
2438
Female, age 94, left hemisphere
127911.9
2619
Male, age 74, both hemispheres
90064.9
2042
Male, age 76, both hemispheres
74097.6
1901
Male, age 80, both hemispheres
56100.4
1977
Female, age 85, both hemispheres
51640.3
2729
Female, age 91, right hemisphere
45916.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129417.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 129417.3
Samples: 197
Max nTPM: 616960.8
Min nTPM: 7263.1
Std nTPM: 109757.8
Median nTPM: 91365.7
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36197.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 36197.7
Samples: 4
Max nTPM: 38950.4
Min nTPM: 32114.7
Sample A
Male
38687.9
Sample B
Male
32114.7
Sample C
Female
38950.4
Sample D
Female
35037.7
Hippocampal formation nTPM: 30834.4
Samples: 4
Max nTPM: 36361.4
Min nTPM: 28610.5
Sample A
Male
36361.4
Sample B
Male
29711.6
Sample C
Female
28654.1
Sample D
Female
28610.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
