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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
102676.5
nTPM
HPA Brain:
110698.4
nTPM
GTEx:
102676.5
nTPM
Pig:
95675.0
nTPM
Mouse:
30965.9
nTPM
Allen mouse:
24.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110698.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 94668.4
2586
Male, age 75, left hemisphere
170728.9
2828
Female, age 72, unknown
123902.9
2666
Male, age 74, left hemisphere
109389.1
2219
Male, age 76, both hemispheres
106318.7
1833
Male, age 53, unknown
84757.0
2019
Male, age 18, unknown
81382.8
1870
Female, age 42, unknown
76935.9
1827
Male, age 72, unknown
75573.5
1830
Male, age 51, unknown
72726.2
2411
Female, age 72, unknown
44969.3
Dorsal raphe nucleus nTPM: 68582.1
1828
Male, age 53, unknown
95516.2
2047
Male, age 72, unknown
73296.9
2750
Male, age 76, both hemispheres
68759.1
2016
Female, age 72, unknown
65085.3
2298
Female, age 72, unknown
40253.1
Inferior colliculus nTPM: 74316.3
2849
Male, age 72, unknown
86769.0
1890
Male, age 53, unknown
85100.2
1848
Female, age 42, unknown
75408.3
2097
Female, age 72, unknown
49987.5
Median raphe nucleus nTPM: 99562.5
2220
Male, age 76, midline
99562.5
Periaquaductal grey, anterior nTPM: 68970.8
2502
Female, age 75, unknown
82830.4
1795
Male, age 51, unknown
65077.9
1947
Male, age 18, unknown
59004.1
Periaquaductal grey, dorsal nTPM: 69861.9
2850
Male, age 76, both hemispheres
82571.8
1831
Male, age 72, unknown
70365.3
2464
Female, age 72, unknown
63745.3
1840
Male, age 53, unknown
62765.4
Periaquaductal grey, lateral nTPM: 48951.4
2053
Male, age 18, unknown
57686.9
2140
Male, age 76, both hemispheres
51517.4
2272
Male, age 74, both hemispheres
37649.9
Pretectal area nTPM: 87017.2
1817
Female, age 42, unknown
128864.4
1816
Male, age 51, unknown
127054.3
1944
Female, age 72, unknown
123725.0
2667
Female, age 75, unknown
115742.6
2007
Male, age 72, unknown
110940.1
1815
Male, age 53, unknown
103933.8
2825
Male, age 18, unknown
70894.0
2407
Male, age 75, both hemispheres
52512.3
2316
Male, age 76, right hemisphere
45691.0
2224
Female, age 72, unknown
44567.1
2273
Male, age 74, both hemispheres
33264.3
Red nucleus nTPM: 87487.6
2584
Male, age 75, left hemisphere
118027.8
2588
Male, age 74, left hemisphere
114586.8
2503
Female, age 72, unknown
97662.5
2785
Male, age 18, unknown
90506.2
1954
Female, age 42, unknown
90062.8
2823
Male, age 76, right hemisphere
82284.2
1821
Female, age 72, unknown
81282.2
1865
Male, age 51, unknown
80435.7
2227
Male, age 72, unknown
79655.2
2769
Male, age 72, unknown
78670.5
1904
Male, age 53, unknown
74383.6
2725
Female, age 75, unknown
62293.6
Substantia nigra nTPM: 110698.4
2665
Male, age 74, both hemispheres
241942.3
1916
Female, age 42, unknown
122701.1
2699
Male, age 18, unknown
118143.2
2583
Male, age 75, right hemisphere
104899.8
1889
Female, age 72, unknown
100750.5
1941
Male, age 53, unknown
95609.9
1851
Male, age 51, unknown
92853.3
2241
Male, age 72, unknown
90816.4
2590
Female, age 75, unknown
78247.6
2409
Female, age 72, unknown
61019.7
Superior colliculus nTPM: 82412.2
2664
Male, age 75, both hemispheres
132614.6
2087
Female, age 72, unknown
111385.5
2668
Female, age 75, unknown
81858.4
2587
Male, age 74, left hemisphere
81459.1
2261
Male, age 18, unknown
78394.1
1839
Male, age 51, unknown
71974.9
1913
Female, age 42, unknown
71722.1
1995
Male, age 72, unknown
67341.8
1796
Male, age 53, unknown
66505.9
1895
Male, age 76, right hemisphere
60865.6
Ventral tegmental area nTPM: 81719.4
2218
Male, age 76, both hemispheres
113303.9
1942
Male, age 51, unknown
84800.5
2223
Female, age 72, unknown
81799.4
1915
Female, age 42, unknown
80155.9
2410
Female, age 72, unknown
67282.9
2021
Male, age 53, unknown
62973.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102676.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 102676.5
Samples: 139
Max nTPM: 459082.0
Min nTPM: 5976.8
Std nTPM: 89696.6
Median nTPM: 74002.3
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30965.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30965.9
Samples: 4
Max nTPM: 32684.9
Min nTPM: 29288.7
Sample A
Male
32684.9
Sample B
Male
31418.4
Sample C
Female
30471.7
Sample D
Female
29288.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
