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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:149672.7 nTPM
Pig:90494.3 nTPM
Allen mouse:27.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149672.7
Sample id Sample description nTPM
Area postrema
nTPM: 119930.1
2799 Male, age 61, both hemispheres 157823.4
2306 Male, age 80, both hemispheres 122424.8
2054 Male, age 76, both hemispheres 79542.1
Dorsal medullary reticular nucleus
nTPM: 96223.6
2088 Male, age 76, both hemispheres 109895.8
2373 Male, age 61, both hemispheres 102577.1
2040 Female, age 85, both hemispheres 76198.0
Dorsal motor vagal complex
nTPM: 125853.1
2797 Male, age 61, both hemispheres 295435.7
2807 Female, age 85, both hemispheres 161188.0
2643 Male, age 74, both hemispheres 121650.3
2185 Male, age 76, both hemispheres 116142.9
2844 Male, age 55, unknown 89741.3
2133 Female, age 91, both hemispheres 81444.8
2813 Female, age 72, unknown 78355.6
2000 Male, age 74, unknown 62866.4
Gigantocellular reticular nuclei, medullary
nTPM: 107548.3
2387 Female, age 91, both hemispheres 173912.7
2310 Male, age 80, both hemispheres 158641.6
2314 Male, age 61, both hemispheres 103781.5
2462 Male, age 74, both hemispheres 88694.6
2022 Male, age 76, right hemisphere 65752.4
1876 Female, age 85, both hemispheres 54507.2
Gigantocellular reticular nuclei, pars
nTPM: 125215.1
2330 Male, age 80, both hemispheres 185067.9
2706 Male, age 80, both hemispheres 178136.0
2084 Female, age 85, both hemispheres 91321.2
2336 Male, age 61, both hemispheres 91135.6
2168 Male, age 76, both hemispheres 80414.7
Inferior olive
nTPM: 106384.4
2628 Female, age 91, both hemispheres 178470.5
2379 Male, age 80, both hemispheres 134640.6
2085 Female, age 85, both hemispheres 82091.1
2178 Male, age 61, both hemispheres 81038.6
2563 Male, age 74, both hemispheres 55680.9
Lateral medullary reticular nucleus
nTPM: 83180.9
2804 Female, age 91, both hemispheres 142649.8
2374 Male, age 61, both hemispheres 108905.2
2044 Male, age 76, both hemispheres 86834.0
2190 Female, age 85, both hemispheres 83432.2
2852 Male, age 80, both hemispheres 44488.0
2305 Male, age 74, both hemispheres 32775.8
Medial olivary nucleus
nTPM: 54936.6
2851 Male, age 80, both hemispheres 102092.7
2138 Female, age 91, both hemispheres 56651.8
1962 Male, age 76, both hemispheres 36109.5
1943 Male, age 61, both hemispheres 24892.5
Medial vestibular nucleus
nTPM: 100310.6
2624 Male, age 61, both hemispheres 162908.6
2134 Male, age 76, both hemispheres 109534.2
2803 Female, age 91, both hemispheres 98474.6
2093 Male, age 80, both hemispheres 84445.6
2801 Male, age 74, both hemispheres 78446.2
2743 Female, age 85, both hemispheres 68054.2
Motor hypoglossal nucleus
nTPM: 98666.5
2461 Male, age 61, both hemispheres 152070.3
2132 Female, age 85, both hemispheres 111989.2
2182 Male, age 80, both hemispheres 92417.3
2125 Female, age 91, both hemispheres 79669.1
2277 Male, age 76, both hemispheres 57186.5
Nucleus ambiguus
nTPM: 41725.8
2071 Male, age 76, both hemispheres 52029.1
2096 Female, age 85, both hemispheres 31422.5
Nucleus cuneatus
nTPM: 149672.7
2805 Female, age 91, both hemispheres 297685.9
2562 Male, age 61, both hemispheres 153134.3
2131 Male, age 76, both hemispheres 148329.3
2381 Male, age 80, both hemispheres 143821.4
2808 Female, age 85, both hemispheres 143345.9
2100 Male, age 76, both hemispheres 129662.6
2380 Male, age 80, both hemispheres 121756.7
2564 Male, age 74, both hemispheres 115089.3
2376 Male, age 61, both hemispheres 94229.1
Nucleus gracilis
nTPM: 126713.1
2299 Female, age 85, both hemispheres 176296.2
2382 Male, age 80, both hemispheres 132046.6
2627 Male, age 74, both hemispheres 71796.6
Nucleus raphe obscurus
nTPM: 60097.3
2800 Male, age 61, midline 78590.8
2845 Female, age 85, midline 69905.8
2142 Male, age 76, midline 31795.3
Nucleus raphe pallidus
nTPM: 48234.8
2183 Male, age 80, midline 70625.5
2145 Male, age 76, midline 47387.3
1924 Male, age 61, midline 26691.5
Nucleus tractus solitarii
nTPM: 98854.6
2191 Female, age 85, both hemispheres 123347.6
2307 Male, age 80, both hemispheres 118366.1
2656 Male, age 76, both hemispheres 83606.1
2144 Female, age 91, right hemisphere 70098.6
Parvicellular reticular nuclei
nTPM: 81653.5
2558 Male, age 74, both hemispheres 106822.6
2095 Male, age 76, both hemispheres 77890.6
2119 Male, age 80, both hemispheres 60247.3
Parvicellular reticular nuclei, medullary
nTPM: 87390.2
2181 Male, age 80, left hemisphere 99604.3
2091 Female, age 85, both hemispheres 90178.9
2189 Female, age 91, both hemispheres 72387.4
Peritrigeminal nucleus
nTPM: 69840.5
2136 Male, age 76, both hemispheres 94253.5
2179 Male, age 61, both hemispheres 61164.0
2067 Female, age 85, both hemispheres 54103.9
Prepositus hypoglossal nucleus
nTPM: 102090.4
2855 Female, age 85, right hemisphere 111886.0
2086 Male, age 80, both hemispheres 92294.8
Spinal trigeminal nucleus, caudal
nTPM: 108625.2
2390 Female, age 91, both hemispheres 131269.9
2308 Male, age 80, both hemispheres 129693.1
2447 Male, age 76, both hemispheres 119733.1
2312 Male, age 61, both hemispheres 82320.3
2642 Male, age 74, both hemispheres 80109.4
Spinal trigeminal nucleus, interpolar
nTPM: 96568.9
2625 Male, age 61, both hemispheres 127796.4
2389 Female, age 91, both hemispheres 120785.4
2066 Male, age 76, right hemisphere 91745.5
2386 Female, age 85, both hemispheres 71275.3
2033 Male, age 80, both hemispheres 71242.1
Spinal vestibular nucleus
nTPM: 90668.8
2796 Male, age 61, both hemispheres 120814.5
2806 Female, age 85, both hemispheres 114452.7
2384 Male, age 74, both hemispheres 83803.3
2186 Female, age 91, both hemispheres 80033.6
2748 Male, age 76, both hemispheres 75388.8
2780 Male, age 80, both hemispheres 69519.8
Superior vestibular nucleus
nTPM: 57618.0
2061 Male, age 76, both hemispheres 69152.4
2015 Male, age 80, both hemispheres 60587.0
2383 Male, age 74, both hemispheres 43114.5
Ventral medullary reticular nucleus
nTPM: 91857.5
2372 Male, age 61, both hemispheres 111349.3
2060 Male, age 76, both hemispheres 72365.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 89040.3
2302 Female, age 91, both hemispheres 140015.6
2118 Male, age 80, both hemispheres 89028.1
1986 Male, age 76, both hemispheres 74151.4
2180 Male, age 61, both hemispheres 72293.7
2741 Female, age 85, both hemispheres 69712.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90494.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 90494.3
Samples: 4

Max nTPM: 112595.3
Min nTPM: 68854.7
Sample A Female 81923.2
Sample B Female 112595.3
Sample C Male 98604.1
Sample D Male 68854.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 27.8
75043148 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 27.8
73927706 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 22.4

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