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MT-CO1
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  • MT-CO1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:34393.8 nTPM
HPA:21073.5 nTPM
GTEx:34393.8 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA069328Antibody CAB016241
Endocrine cells High-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells High-
Paneth cells High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21073.5
overview
Male, age 65
Small intestine sample 232
nTPM: 23305.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 21651.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 16058.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 23278.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34393.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 34393.8
Samples: 187

Max nTPM: 120815.9
Min nTPM: 509.0
Std nTPM: 22060.1
Median nTPM: 30998.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 120815.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 101127.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 98485.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 96525.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 89352.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 88748.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 86259.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 85701.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 78060.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 77948.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 76326.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 76194.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 76140.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 73102.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 71719.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 68809.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 68485.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 64208.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 61174.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 60775.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 60690.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 59345.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 58183.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 58106.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 58016.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 57058.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 56980.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 56794.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 56024.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 55696.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 55658.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 53137.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 52838.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 52756.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 50300.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 50263.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 50174.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 49952.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 49780.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 49686.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 48773.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 48075.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 47824.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 47564.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 47533.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 47451.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44970.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 44937.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 44353.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 43404.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 43003.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 42775.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 42660.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 41411.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 41387.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 41083.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 40585.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 40300.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 40231.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 39985.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 39331.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 38934.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 38879.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 38817.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 38345.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 38169.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 38012.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 37956.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 36941.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 35884.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 35737.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 35708.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 35471.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 35277.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 35140.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 35127.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 34990.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 34842.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 34810.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 34733.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 34135.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 33982.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 33807.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 33754.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 33678.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 33405.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 33045.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 32835.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 32596.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 32075.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 32052.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 31603.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 31195.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 30998.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 30828.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 30417.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 30366.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 30193.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 30051.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 28794.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 28760.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 28480.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 28410.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 28170.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 27983.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 27573.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27376.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 27274.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 27082.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 27066.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 26799.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 26152.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 25413.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25143.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 25068.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 24701.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 24698.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 24203.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 23781.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 23581.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 23528.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 23284.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 23142.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 22743.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 22419.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 22363.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 22329.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 22098.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 21703.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 21535.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 21091.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 21024.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 20633.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 20619.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 20380.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 20352.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 20227.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 20214.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 20212.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19999.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 19962.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 19949.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 19017.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 18917.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 18804.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18744.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 17833.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 17682.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 16688.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 16547.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 16534.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 16495.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 16193.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 16029.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 15025.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 14021.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14003.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 13984.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 13855.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 13492.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 13142.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 12482.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 12467.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 12407.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 12281.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 12144.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 11557.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 11388.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 10319.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 10244.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9932.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 8823.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 8247.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4998.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4049.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3872.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3193.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2504.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2462.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2085.6
GTEX-1192X-2526-SM-59868 50-59 years, male 2022.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1647.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1453.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1392.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1152.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 800.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 509.0
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