MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:165.9 nTPM
HPA Brain:137.3 nTPM
GTEx:165.9 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:181.7 nTPM
Mouse:70.5 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 137.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.0
2666 Male, age 74, left hemisphere 135.5
2586 Male, age 75, left hemisphere 133.7
1870 Female, age 42, unknown 132.3
2411 Female, age 72, unknown 131.2
1827 Male, age 72, unknown 129.3
1830 Male, age 51, unknown 127.4
1833 Male, age 53, unknown 127.2
2019 Male, age 18, unknown 126.1
2828 Female, age 72, unknown 122.6
2219 Male, age 76, both hemispheres 84.6
Dorsal raphe nucleus
nTPM: 126.2
2298 Female, age 72, unknown 145.8
2047 Male, age 72, unknown 135.1
2750 Male, age 76, both hemispheres 128.7
1828 Male, age 53, unknown 114.1
2016 Female, age 72, unknown 107.3
Inferior colliculus
nTPM: 128.0
2849 Male, age 72, unknown 133.8
1848 Female, age 42, unknown 132.1
1890 Male, age 53, unknown 125.9
2097 Female, age 72, unknown 120.2
Median raphe nucleus
nTPM: 113.5
2220 Male, age 76, midline 113.5
Periaquaductal grey, anterior
nTPM: 122.1
1947 Male, age 18, unknown 129.1
2502 Female, age 75, unknown 128.9
1795 Male, age 51, unknown 108.3
Periaquaductal grey, dorsal
nTPM: 108.8
1840 Male, age 53, unknown 118.2
2850 Male, age 76, both hemispheres 110.7
2464 Female, age 72, unknown 107.1
1831 Male, age 72, unknown 99.0
Periaquaductal grey, lateral
nTPM: 106.4
2053 Male, age 18, unknown 108.0
2140 Male, age 76, both hemispheres 106.5
2272 Male, age 74, both hemispheres 104.9
Pretectal area
nTPM: 117.0
2007 Male, age 72, unknown 143.5
1817 Female, age 42, unknown 136.8
2667 Female, age 75, unknown 126.7
1815 Male, age 53, unknown 120.6
2825 Male, age 18, unknown 118.1
1816 Male, age 51, unknown 114.5
2224 Female, age 72, unknown 111.2
2407 Male, age 75, both hemispheres 109.0
1944 Female, age 72, unknown 104.1
2316 Male, age 76, right hemisphere 103.1
2273 Male, age 74, both hemispheres 99.8
Red nucleus
nTPM: 137.3
1821 Female, age 72, unknown 156.4
2769 Male, age 72, unknown 151.1
2785 Male, age 18, unknown 143.6
2227 Male, age 72, unknown 142.6
1904 Male, age 53, unknown 140.8
2588 Male, age 74, left hemisphere 139.1
1865 Male, age 51, unknown 137.6
2503 Female, age 72, unknown 134.7
1954 Female, age 42, unknown 130.7
2823 Male, age 76, right hemisphere 126.9
2584 Male, age 75, left hemisphere 123.1
2725 Female, age 75, unknown 120.8
Substantia nigra
nTPM: 107.4
1889 Female, age 72, unknown 130.1
1916 Female, age 42, unknown 124.1
2665 Male, age 74, both hemispheres 122.4
1851 Male, age 51, unknown 116.9
1941 Male, age 53, unknown 115.7
2583 Male, age 75, right hemisphere 114.6
2699 Male, age 18, unknown 100.9
2590 Female, age 75, unknown 96.0
2409 Female, age 72, unknown 81.4
2241 Male, age 72, unknown 72.3
Superior colliculus
nTPM: 120.6
2587 Male, age 74, left hemisphere 147.6
1839 Male, age 51, unknown 130.9
2668 Female, age 75, unknown 129.7
1895 Male, age 76, right hemisphere 123.2
2664 Male, age 75, both hemispheres 122.6
1796 Male, age 53, unknown 118.8
1995 Male, age 72, unknown 115.1
1913 Female, age 42, unknown 111.6
2261 Male, age 18, unknown 107.8
2087 Female, age 72, unknown 98.6
Ventral tegmental area
nTPM: 117.3
2223 Female, age 72, unknown 134.0
2410 Female, age 72, unknown 131.0
1915 Female, age 42, unknown 120.9
2218 Male, age 76, both hemispheres 109.9
1942 Male, age 51, unknown 107.0
2021 Male, age 53, unknown 100.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 165.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.9
Samples: 139

Max nTPM: 329.8
Min nTPM: 87.8
Std nTPM: 40.9
Median nTPM: 158.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 329.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 315.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 303.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 302.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 256.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 245.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 235.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 231.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 229.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 227.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 225.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 181.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.7
Samples: 4

Max nTPM: 190.7
Min nTPM: 123.8
Sample A Female 190.7
Sample B Female 123.8
Sample C Male 155.9
Sample D Male 136.2
Midbrain
nTPM: 179.7
Samples: 4

Max nTPM: 232.3
Min nTPM: 158.5
Sample A Female 232.3
Sample B Female 158.7
Sample C Male 158.5
Sample D Male 169.2
Periaqueductal gray
nTPM: 143.0
Samples: 3

Max nTPM: 149.3
Min nTPM: 138.9
Sample B Female 138.9
Sample C Male 149.3
Sample D Male 140.8
Superior colliculi
nTPM: 181.7
Samples: 4

Max nTPM: 223.3
Min nTPM: 136.9
Sample A Female 223.3
Sample B Female 136.9
Sample C Male 187.0
Sample D Male 179.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 70.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.5
Samples: 4

Max nTPM: 84.1
Min nTPM: 57.6
Sample A Male 84.1
Sample B Male 67.4
Sample C Female 57.6
Sample D Female 72.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69837974 Antisense, RP_050224_01_D02, Mouse strain C57BL/6J (56 days, male) 7.4
74819344 Antisense, RP_060315_02_E11, Mouse strain C57BL/6J (56 days, male) 4.7

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