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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:217.7 nTPM
HPA Brain:147.9 nTPM
GTEx:217.7 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:170.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 135.3
1981 Female, age 72, midline 174.0
2565 Male, age 75, midline 159.1
2194 Female, age 79, both hemispheres 125.2
2816 Male, age 47, midline 124.7
2048 Male, age 55, midline 93.6
Cervical spinal cord, dorsal horn
nTPM: 145.2
2296 Male, age 66, both hemispheres 192.4
2173 Female, age 72, unknown 186.3
2069 Male, age 47, both hemispheres 143.6
1877 Male, age 55, unknown 134.3
2297 Male, age 75, both hemispheres 121.5
2721 Male, age 90, both hemispheres 93.3
Cervical spinal cord, ventral horn
nTPM: 147.9
2480 Male, age 75, both hemispheres 179.8
2098 Female, age 72, unknown 157.0
2809 Male, age 90, both hemispheres 151.4
2295 Male, age 66, both hemispheres 138.0
2820 Female, age 79, both hemispheres 133.7
2068 Male, age 55, unknown 127.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 217.7
Samples: 159

Max nTPM: 335.2
Min nTPM: 100.3
Std nTPM: 52.0
Median nTPM: 217.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 335.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 333.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 333.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 333.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 332.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 331.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 331.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 329.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 320.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 313.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 310.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 307.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 301.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 295.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 290.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 286.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 284.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 281.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 280.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 280.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 278.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 278.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 276.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 269.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 266.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 265.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 263.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 262.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 261.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 259.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 259.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 259.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 258.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 257.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 257.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 253.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 253.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 251.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 251.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 250.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 249.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 249.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 248.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 247.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 242.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 240.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 240.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 239.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 238.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 237.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 234.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 234.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 233.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 233.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 231.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 230.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 230.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 229.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 229.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 227.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 226.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 226.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 226.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 225.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 224.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 224.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 224.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 222.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 222.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 222.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 221.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 221.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 221.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 220.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 219.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 219.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 218.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 218.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 218.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 217.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 217.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 216.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 216.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 215.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 214.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 213.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 212.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 211.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 210.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 209.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 207.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 207.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 207.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 206.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 206.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 206.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 203.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 201.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 201.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 200.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 199.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 197.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 196.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 196.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 196.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 194.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 193.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 191.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 191.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 190.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 189.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 189.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 187.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 186.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 186.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 185.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 184.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 184.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 183.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 178.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 176.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 176.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 176.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 173.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 172.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 166.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 165.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 165.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 160.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 160.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 157.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 157.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 156.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 153.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 153.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 152.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 150.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 148.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 147.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 147.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 146.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 144.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 142.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 141.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 139.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 138.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 137.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 134.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 124.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 114.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 111.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 100.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.5
FF:10181-103D1 60 years, female 96.5
FF:10159-103A6 76 years, female 64.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 166.8
Samples: 4

Max nTPM: 175.2
Min nTPM: 156.2
Sample A Female 169.4
Sample B Female 156.2
Sample C Male 166.3
Sample D Male 175.2
Ventral spinal cord
nTPM: 170.9
Samples: 4

Max nTPM: 193.0
Min nTPM: 150.0
Sample A Female 150.0
Sample B Female 173.9
Sample C Male 166.5
Sample D Male 193.0

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