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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

70.172
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:326.1 nTPM
HPA Brain:445.6 nTPM
GTEx:326.1 nTPM
FANTOM5:867.3 Scaled Tags Per Million
Pig:488.8 nTPM
Mouse:1019.4 nTPM
Allen mouse:7.4 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078785
Amygdala mean intensity 70.172
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 70.172
Basal medial amygdaloid nucleus 53.496
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 32.282
Cortical amygdala 53.086
Central amygdala 40.993
Medial amygdaloid nucleus 50.808

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

445.6
Sample id Sample description nTPM
Amygdala
nTPM: 391.5
2814 Male, age 76, right hemisphere 570.4
2695 Female, age 67, right hemisphere 358.1
1987 Female, age 91, left hemisphere 356.4
2517 Female, age 94, left hemisphere 349.4
2514 Male, age 75, right hemisphere 323.3
Basal amygdala
nTPM: 445.6
2685 Female, age 94, left hemisphere 537.8
2243 Female, age 91, right hemisphere 528.4
1955 Male, age 76, both hemispheres 464.8
2110 Male, age 80, left hemisphere 437.3
2827 Female, age 67, right hemisphere 380.3
2609 Male, age 75, right hemisphere 324.7
Central amygdala
nTPM: 431.4
2239 Male, age 80, left hemisphere 499.3
1905 Male, age 76, both hemispheres 475.0
2701 Female, age 91, right hemisphere 442.0
2826 Female, age 94, left hemisphere 425.3
2515 Male, age 75, right hemisphere 315.1
Corticomedial amygdala
nTPM: 436.8
2829 Male, age 80, left hemisphere 520.2
2242 Female, age 91, right hemisphere 488.9
2240 Male, age 76, both hemispheres 474.9
2429 Female, age 94, left hemisphere 439.4
2535 Female, age 67, right hemisphere 397.1
2428 Male, age 75, right hemisphere 300.2
Lateral amygdala
nTPM: 415.0
1883 Male, age 76, both hemispheres 500.4
2534 Female, age 94, left hemisphere 497.7
2255 Female, age 91, right hemisphere 429.3
2256 Male, age 80, left hemisphere 428.0
2830 Female, age 67, right hemisphere 332.9
2516 Male, age 75, right hemisphere 301.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 326.1
Samples: 152

Max nTPM: 1046.2
Min nTPM: 102.1
Std nTPM: 143.1
Median nTPM: 303.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1046.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 838.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 794.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 764.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 646.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 606.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 546.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 545.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 541.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 540.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 528.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 526.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 524.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 517.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 512.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 498.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 497.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 496.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 495.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 471.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 468.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 465.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 452.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 449.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 441.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 440.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 439.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 433.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 426.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 423.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 423.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 422.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 416.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 415.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 408.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 402.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 389.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 389.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 389.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 387.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 386.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 379.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 378.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 376.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 371.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 370.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 368.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 366.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 365.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 365.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 362.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 362.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 362.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 356.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 354.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 353.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 353.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 350.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 341.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 340.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 340.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 329.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 327.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 327.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 324.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 319.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 319.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 318.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 317.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 315.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 309.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 307.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 306.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 305.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 304.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 303.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 298.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 292.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 291.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 288.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 281.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 278.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 275.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 271.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 268.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 267.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 265.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 265.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 265.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 259.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 259.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 258.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 256.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 254.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 253.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 251.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 251.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 249.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 244.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 244.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 242.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 241.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 238.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 237.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 236.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 234.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 232.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 232.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 232.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 231.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 230.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 228.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 226.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 225.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 223.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 222.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 221.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 221.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 218.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 217.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 212.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 212.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 211.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 207.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 202.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 202.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 201.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 200.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 198.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 194.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 187.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 187.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 184.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 182.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 179.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 177.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 176.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 176.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 174.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 173.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 164.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 163.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 162.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 148.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 144.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 129.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 106.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 102.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

867.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 867.3
FF:10151-102I7 76 years, female 867.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.8
Pig sample Sample description nTPM
Amygdala
nTPM: 488.9
Samples: 4

Max nTPM: 699.4
Min nTPM: 376.2
Sample A Female 699.4
Sample B Female 376.2
Sample C Male 456.0
Sample D Male 423.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1019.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 1019.4
Samples: 4

Max nTPM: 1104.1
Min nTPM: 967.9
Sample A Male 1005.5
Sample B Male 1000.0
Sample C Female 1104.1
Sample D Female 967.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.4
1092 Antisense, RP_Baylor_103099, Mouse strain C57BL/6J (56 days, male) 7.4
1093 Antisense, RP_Baylor_103099, Mouse strain C57BL/6J (56 days, male) 0.4

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