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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:437.2 nTPM
GTEx:437.2 nTPM
FANTOM5:607.2 Scaled Tags Per Million
Pig:359.4 nTPM
Mouse:928.5 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

437.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 437.2
Samples: 105

Max nTPM: 628.6
Min nTPM: 287.2
Std nTPM: 65.3
Median nTPM:
316_1 62 years, male 628.6
322_1 76 years, male 613.2
386_1 76 years, male 567.7
377_1 82 years, female 566.5
319_1 81 years, male 545.4
379_1 60 years, male 545.3
6_1 73 years, female 532.5
425_1 59 years, female 525.3
447_1 81 years, male 525.0
321_1 62 years, female 521.1
335_1 73 years, female 520.1
324_1 76 years, male 516.9
376_1 75 years, female 516.7
229_1 69 years, female 515.8
218_1 71 years, female 504.9
189_1 76 years, male 504.8
163_1 78 years, male 503.4
17_1 71 years, male 497.9
266_1 85 years, male 493.3
177_1 74 years, male 491.6
352_1 62 years, male 490.8
350_1 84 years, female 483.8
347_1 72 years, male 482.6
292_1 71 years, male 479.1
237_1 82 years, male 478.9
375_1 74 years, female 476.5
153_1 70 years, female 474.5
404_1 82 years, female 472.3
348_1 84 years, male 468.8
518_1 75 years, female 468.8
318_1 68 years, male 468.6
320_1 89 years, female 467.4
243_1 75 years, male 466.5
172_1 72 years, female 465.0
293_1 68 years, female 464.5
286_1 68 years, female 463.4
246_1 77 years, male 460.4
349_1 83 years, male 460.3
468_1 89 years, male 459.5
499_1 55 years, female 456.0
35_1 74 years, female 454.8
251_1 78 years, male 451.8
41_1 94 years, female 449.9
389_1 86 years, female 448.9
517_1 88 years, male 446.7
354_1 81 years, female 446.5
126_1 63 years, male 444.5
526_1 61 years, male 444.5
406_1 79 years, male 444.2
353_1 82 years, female 443.0
311_1 78 years, male 439.1
291_1 76 years, male 438.4
396_1 62 years, male 437.2
405_1 91 years, male 437.1
265_1 87 years, male 434.9
415_1 77 years, female 434.0
307_1 66 years, female 433.2
452_1 88 years, female 432.6
254_1 77 years, female 431.9
480_1 63 years, male 431.6
120_1 70 years, female 429.3
145_1 84 years, male 427.7
394_1 75 years, female 424.4
139_1 64 years, female 424.3
18_1 88 years, male 422.5
315_1 62 years, female 421.5
288_1 66 years, female 415.3
355_1 70 years, female 414.1
217_1 76 years, male 410.3
4_1 88 years, female 410.1
264_1 73 years, female 408.4
466_1 57 years, female 406.2
137_1 83 years, male 404.6
313_1 79 years, female 402.2
506_1 65 years, male 401.6
384_1 83 years, male 401.4
503_1 68 years, male 397.9
317_1 60 years, male 397.3
351_1 91 years, male 396.4
117_1 61 years, male 396.3
495_1 57 years, female 393.9
414_1 84 years, female 392.3
43_1 64 years, female 386.6
142_1 61 years, female 379.8
81_1 67 years, male 378.7
356_1 87 years, female 375.0
413_1 59 years, female 375.0
173_1 67 years, male 374.3
295_1 61 years, female 373.8
99_1 64 years, male 369.6
32_1 67 years, male 367.5
2_1 77 years, female 363.3
115_1 83 years, male 362.5
109_1 81 years, female 360.8
501_1 88 years, male 357.4
314_1 67 years, male 354.6
9_1 66 years, female 350.7
42_1 85 years, male 344.6
162_1 79 years, female 336.0
119_1 70 years, female 329.2
308_1 70 years, female 320.4
490_1 67 years, female 306.9
149_1 88 years, male 293.0
89_1 63 years, male 289.0
491_1 89 years, female 287.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

607.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 607.2
FF:10030-101E3 24-65 years, mixed 607.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

359.4
Pig sample Sample description nTPM
Retina
nTPM: 359.4
Samples: 4

Max nTPM: 448.3
Min nTPM: 294.7
Sample A Female 373.3
Sample B Female 321.2
Sample C Male 448.3
Sample D Male 294.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

928.5
Mouse sample Sample description nTPM
Retina
nTPM: 928.5
Samples: 4

Max nTPM: 1030.4
Min nTPM: 854.9
Sample A Male 854.9
Sample B Male 958.2
Sample C Female 1030.4
Sample D Female 870.4

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