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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2006.5 nTPM
HPA Brain:512.1 nTPM
GTEx:2006.5 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Mouse:0.3 nTPM
Allen mouse:3.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

512.1
Sample id Sample description nTPM
Amygdala
nTPM: 512.1
2695 Female, age 67, right hemisphere 677.5
2514 Male, age 75, right hemisphere 528.1
2517 Female, age 94, left hemisphere 468.9
1987 Female, age 91, left hemisphere 465.2
2814 Male, age 76, right hemisphere 420.8
Basal amygdala
nTPM: 421.4
2827 Female, age 67, right hemisphere 602.4
2609 Male, age 75, right hemisphere 461.6
2110 Male, age 80, left hemisphere 421.6
2685 Female, age 94, left hemisphere 392.3
1955 Male, age 76, both hemispheres 331.8
2243 Female, age 91, right hemisphere 318.6
Central amygdala
nTPM: 468.0
2826 Female, age 94, left hemisphere 756.0
2515 Male, age 75, right hemisphere 511.0
1905 Male, age 76, both hemispheres 391.1
2239 Male, age 80, left hemisphere 368.1
2701 Female, age 91, right hemisphere 313.8
Corticomedial amygdala
nTPM: 377.7
2428 Male, age 75, right hemisphere 430.4
2535 Female, age 67, right hemisphere 415.9
2829 Male, age 80, left hemisphere 398.7
2429 Female, age 94, left hemisphere 367.5
2242 Female, age 91, right hemisphere 327.2
2240 Male, age 76, both hemispheres 326.2
Lateral amygdala
nTPM: 500.0
2830 Female, age 67, right hemisphere 778.8
2516 Male, age 75, right hemisphere 594.8
2534 Female, age 94, left hemisphere 555.0
2256 Male, age 80, left hemisphere 397.1
2255 Female, age 91, right hemisphere 341.8
1883 Male, age 76, both hemispheres 332.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2006.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2006.5
Samples: 152

Max nTPM: 6188.5
Min nTPM: 800.7
Std nTPM: 878.0
Median nTPM: 1809.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6188.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5114.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5044.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4824.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4187.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3966.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3838.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3811.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3753.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3635.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3490.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3398.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 3280.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3111.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3068.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3049.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2924.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2915.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2874.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2834.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2832.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2807.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2760.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2739.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2630.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2626.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2624.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2603.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2595.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2555.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2515.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2474.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2443.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2391.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2358.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2338.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2330.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2329.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2312.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2301.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2282.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2264.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2239.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2220.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2184.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2163.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2162.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2157.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2147.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2144.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2143.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2108.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2087.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2073.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2062.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2058.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2037.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2036.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2028.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2006.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1948.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1947.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1933.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1929.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1925.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1925.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1914.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1903.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1896.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1893.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1892.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1888.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1877.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1861.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1815.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1813.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1805.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1792.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1766.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1755.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1726.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1726.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1717.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1700.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1687.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1671.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1667.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1655.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1654.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1650.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1649.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1631.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1623.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1622.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1610.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1603.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1591.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1587.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1587.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1572.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1568.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1564.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1555.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1534.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1533.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1527.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1515.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1512.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1503.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1455.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1449.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1431.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1429.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1417.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1415.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1403.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1398.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1381.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1360.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1359.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1341.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1338.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1322.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1316.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1307.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1306.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1284.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1278.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1268.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1260.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1223.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1220.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1203.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1202.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1200.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1182.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1154.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1153.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1140.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1121.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1119.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1106.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1051.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1042.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1018.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1002.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1002.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1002.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 951.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 946.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 890.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 800.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 93.3
FF:10151-102I7 76 years, female 93.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
69873283 Antisense, RP_050510_04_H10, Mouse strain C57BL/6J (56 days, male) 3.6

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