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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1687.8 nTPM
HPA Brain:703.1 nTPM
GTEx:1687.8 nTPM
FANTOM5:97.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

703.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 491.1
2565 Male, age 75, midline 624.6
1981 Female, age 72, midline 606.1
2048 Male, age 55, midline 470.6
2194 Female, age 79, both hemispheres 378.1
2816 Male, age 47, midline 376.3
Cervical spinal cord, dorsal horn
nTPM: 508.1
2069 Male, age 47, both hemispheres 656.4
2173 Female, age 72, unknown 627.3
2296 Male, age 66, both hemispheres 570.8
1877 Male, age 55, unknown 507.4
2297 Male, age 75, both hemispheres 375.9
2721 Male, age 90, both hemispheres 311.1
Cervical spinal cord, ventral horn
nTPM: 703.1
2480 Male, age 75, both hemispheres 978.7
2809 Male, age 90, both hemispheres 909.6
2098 Female, age 72, unknown 863.2
2295 Male, age 66, both hemispheres 606.9
2068 Male, age 55, unknown 564.5
2820 Female, age 79, both hemispheres 295.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1687.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1687.8
Samples: 159

Max nTPM: 3504.3
Min nTPM: 586.0
Std nTPM: 534.1
Median nTPM: 1625.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3504.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3274.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3060.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2955.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2895.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2862.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2823.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2767.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2641.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2632.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2514.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2505.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2492.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2444.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2437.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2387.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2384.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2318.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2282.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2259.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2251.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2246.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2231.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2227.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2222.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2213.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2211.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2189.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2187.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2144.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2139.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2118.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2114.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2047.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2046.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2038.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2008.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2006.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1972.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1970.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1967.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1949.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1940.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1926.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1925.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1908.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1905.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1900.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1893.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1887.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1878.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1871.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1863.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1857.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1852.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1851.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1850.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1840.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1837.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1821.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1814.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1790.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1780.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1760.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1736.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1727.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1718.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1715.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1715.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1711.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1708.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1703.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1695.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1680.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1667.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1646.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1644.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1632.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1631.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1625.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1622.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1616.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1612.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1607.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1606.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1603.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1600.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1592.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1575.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1573.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1556.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1546.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1545.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1529.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1520.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1518.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1516.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1501.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1484.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1473.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1471.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1467.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1466.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1463.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1447.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1439.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1432.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1430.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1412.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1395.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1380.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1364.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1355.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1351.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1333.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1331.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1316.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1314.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1313.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1305.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1305.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1303.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1301.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1292.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1290.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1285.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1273.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1269.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1250.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1221.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1202.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1181.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1178.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1161.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1148.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1144.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1121.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1116.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1113.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1102.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1087.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1071.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1052.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1043.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1024.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1016.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1014.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 982.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 975.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 969.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 960.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 903.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 858.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 779.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 764.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 749.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 715.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 678.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 586.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 97.3
FF:10181-103D1 60 years, female 114.2
FF:10159-103A6 76 years, female 80.5

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