MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1743.9 nTPM
HPA Brain:471.1 nTPM
GTEx:1743.9 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Mouse:0.2 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 471.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 414.4
2666 Male, age 74, left hemisphere 509.0
2586 Male, age 75, left hemisphere 479.3
1870 Female, age 42, unknown 463.7
2828 Female, age 72, unknown 416.6
2411 Female, age 72, unknown 410.7
1827 Male, age 72, unknown 402.4
2019 Male, age 18, unknown 389.0
1833 Male, age 53, unknown 373.9
1830 Male, age 51, unknown 367.9
2219 Male, age 76, both hemispheres 331.2
Dorsal raphe nucleus
nTPM: 415.4
2298 Female, age 72, unknown 463.7
2750 Male, age 76, both hemispheres 450.0
2016 Female, age 72, unknown 438.7
1828 Male, age 53, unknown 385.1
2047 Male, age 72, unknown 339.7
Inferior colliculus
nTPM: 385.9
1890 Male, age 53, unknown 431.8
2097 Female, age 72, unknown 402.6
2849 Male, age 72, unknown 372.7
1848 Female, age 42, unknown 336.6
Median raphe nucleus
nTPM: 402.3
2220 Male, age 76, midline 402.3
Periaquaductal grey, anterior
nTPM: 428.9
2502 Female, age 75, unknown 524.9
1795 Male, age 51, unknown 390.3
1947 Male, age 18, unknown 371.4
Periaquaductal grey, dorsal
nTPM: 389.2
1840 Male, age 53, unknown 455.0
1831 Male, age 72, unknown 376.5
2464 Female, age 72, unknown 376.1
2850 Male, age 76, both hemispheres 349.4
Periaquaductal grey, lateral
nTPM: 362.9
2053 Male, age 18, unknown 410.2
2140 Male, age 76, both hemispheres 379.2
2272 Male, age 74, both hemispheres 299.4
Pretectal area
nTPM: 384.6
2316 Male, age 76, right hemisphere 455.3
2224 Female, age 72, unknown 417.7
1817 Female, age 42, unknown 413.2
2007 Male, age 72, unknown 409.3
2825 Male, age 18, unknown 400.8
1815 Male, age 53, unknown 399.2
1816 Male, age 51, unknown 369.4
1944 Female, age 72, unknown 355.8
2667 Female, age 75, unknown 353.4
2407 Male, age 75, both hemispheres 351.7
2273 Male, age 74, both hemispheres 304.3
Red nucleus
nTPM: 457.6
2503 Female, age 72, unknown 556.6
1865 Male, age 51, unknown 518.8
1904 Male, age 53, unknown 515.5
1821 Female, age 72, unknown 475.2
2227 Male, age 72, unknown 471.9
2584 Male, age 75, left hemisphere 469.7
2769 Male, age 72, unknown 438.4
2588 Male, age 74, left hemisphere 434.8
2785 Male, age 18, unknown 430.2
2725 Female, age 75, unknown 429.7
1954 Female, age 42, unknown 391.7
2823 Male, age 76, right hemisphere 358.5
Substantia nigra
nTPM: 471.1
1851 Male, age 51, unknown 593.8
2665 Male, age 74, both hemispheres 561.7
2699 Male, age 18, unknown 551.9
2241 Male, age 72, unknown 534.9
2409 Female, age 72, unknown 487.2
1916 Female, age 42, unknown 460.3
1889 Female, age 72, unknown 411.0
2590 Female, age 75, unknown 396.8
2583 Male, age 75, right hemisphere 366.9
1941 Male, age 53, unknown 346.0
Superior colliculus
nTPM: 430.9
1913 Female, age 42, unknown 522.8
2587 Male, age 74, left hemisphere 513.3
2668 Female, age 75, unknown 461.8
1995 Male, age 72, unknown 455.3
2664 Male, age 75, both hemispheres 414.9
1796 Male, age 53, unknown 414.4
2087 Female, age 72, unknown 391.8
2261 Male, age 18, unknown 383.2
1839 Male, age 51, unknown 376.8
1895 Male, age 76, right hemisphere 375.2
Ventral tegmental area
nTPM: 453.1
1915 Female, age 42, unknown 528.7
2223 Female, age 72, unknown 511.7
2021 Male, age 53, unknown 468.7
1942 Male, age 51, unknown 438.2
2410 Female, age 72, unknown 408.2
2218 Male, age 76, both hemispheres 363.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1743.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1743.9
Samples: 139

Max nTPM: 4509.1
Min nTPM: 592.7
Std nTPM: 719.1
Median nTPM: 1591.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4509.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4291.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4243.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3993.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3896.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3554.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3181.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3094.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2821.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2816.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2769.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.6
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69873283 Antisense, RP_050510_04_H10, Mouse strain C57BL/6J (56 days, male) 3.1

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