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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1574.1 nTPM
HPA:928.2 nTPM
GTEx:1574.1 nTPM
FANTOM5:63.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043724Antibody HPA046385
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

928.2
overview
Male, age 65
Small intestine sample 232
nTPM: 1150.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 882.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 851.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 828

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1574.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1574.1
Samples: 187

Max nTPM: 3114.8
Min nTPM: 621.1
Std nTPM: 428.1
Median nTPM: 1544.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3114.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2955.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2849.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2673.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2616.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2523.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2505.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2495.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2454.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2439.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2430.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2412.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2303.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2231.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2227.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2186.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2181.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 2155.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2148.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2124.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2062.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2050.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2012.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2002.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2000.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1989.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1978.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1977.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1965.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1935.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1931.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1926.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1923.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1906.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1896.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1893.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1888.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1879.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1875.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1847.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1829.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1828.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1814.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1812.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1808.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1797.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1794.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1793.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1789.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1768.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1764.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1763.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1759.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1755.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1751.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1741.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1739.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1736.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1734.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1726.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1715.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1709.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1707.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1707.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1701.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1691.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1680.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1677.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1676.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1674.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1665.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1657.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1656.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1636.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1631.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 1630.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1629.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1621.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1620.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1612.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1601.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1594.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1593.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1589.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1585.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1584.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1577.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1574.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1569.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1565.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1564.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1563.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1561.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1544.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1541.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1532.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1514.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1513.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1507.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1495.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1478.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1474.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1463.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1460.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1457.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1450.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1443.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1431.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1427.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1426.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1425.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1423.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1422.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1422.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1413.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1409.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1404.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1401.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1395.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1395.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1376.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1364.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1361.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1357.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1356.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1354.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1340.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1335.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1333.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1320.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1318.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1314.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1314.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1309.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1307.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1305.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1302.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1292.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1291.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1287.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1274.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1271.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1263.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1246.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1240.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1236.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1235.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1220.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1219.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1214.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1182.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1181.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1177.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1175.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1156.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1156.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1154.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1152.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1150.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1148.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1147.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1147.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1133.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 1130.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1112.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1104.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1082.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1079.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1072.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1049.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1044.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1036.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1019.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1012.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 998.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 992.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 982.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 981.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 979.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 969.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 961.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 941.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 933.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 924.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 865.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 839.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 621.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 63.2
FF:10024-101D6 15,40,85 years, mixed 63.2

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