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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1158.2 nTPM
HPA Brain:396.0 nTPM
GTEx:1158.2 nTPM
FANTOM5:32.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 283.7
1981 Female, age 72, midline 378.3
2565 Male, age 75, midline 336.4
2048 Male, age 55, midline 277.3
2816 Male, age 47, midline 215.8
2194 Female, age 79, both hemispheres 210.9
Cervical spinal cord, dorsal horn
nTPM: 326.2
2069 Male, age 47, both hemispheres 421.6
2173 Female, age 72, unknown 401.0
2296 Male, age 66, both hemispheres 328.6
1877 Male, age 55, unknown 317.1
2297 Male, age 75, both hemispheres 247.7
2721 Male, age 90, both hemispheres 241.1
Cervical spinal cord, ventral horn
nTPM: 396.0
2480 Male, age 75, both hemispheres 547.6
2809 Male, age 90, both hemispheres 486.3
2098 Female, age 72, unknown 473.7
2295 Male, age 66, both hemispheres 356.1
2068 Male, age 55, unknown 328.8
2820 Female, age 79, both hemispheres 183.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1158.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1158.2
Samples: 159

Max nTPM: 2096.4
Min nTPM: 514.5
Std nTPM: 328.5
Median nTPM: 1099.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2096.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2042.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2016.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2011.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1986.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1943.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1909.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1903.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1775.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1733.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1724.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1724.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1704.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1699.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1640.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1616.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1581.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1559.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1555.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1542.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1541.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1538.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1527.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1514.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1508.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1499.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1495.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1469.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1455.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1454.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1438.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1421.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1379.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1372.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1368.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1344.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1338.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1337.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1316.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1312.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1309.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1308.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1306.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1306.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1301.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1298.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1292.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1286.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1281.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1278.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1274.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1256.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1254.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1251.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1246.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1240.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1236.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1232.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1232.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1228.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1222.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1221.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1210.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1186.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1184.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1180.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1168.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1161.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1156.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1152.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1149.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1148.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1141.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1140.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1131.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1130.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1126.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1110.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1103.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1099.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1093.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1087.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1087.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1086.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1078.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1074.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1073.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1072.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1064.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1061.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1057.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1056.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1049.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1045.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1029.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1026.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1021.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1019.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1016.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1015.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1012.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1003.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 999.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 988.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 980.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 979.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 976.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 975.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 974.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 965.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 964.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 962.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 961.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 957.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 956.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 953.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 949.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 936.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 928.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 927.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 918.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 909.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 904.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 902.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 885.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 879.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 879.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 871.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 867.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 862.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 856.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 856.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 854.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 853.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 842.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 833.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 819.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 813.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 811.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 811.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 797.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 787.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 781.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 773.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 770.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 765.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 756.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 756.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 751.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 746.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 743.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 705.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 690.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 672.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 645.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 637.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 604.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 595.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 514.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.1
FF:10159-103A6 76 years, female 33.3
FF:10181-103D1 60 years, female 31.0

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