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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2022.0 nTPM
GTEx:2022.0 nTPM
FANTOM5:24.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043724Antibody HPA046385
Squamous epithelial cells MediumMedium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2022.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2022.0
Samples: 156

Max nTPM: 4771.7
Min nTPM: 1100.0
Std nTPM: 522.9
Median nTPM: 1919.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4771.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3911.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3635.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 3575.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3066.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3007.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2968.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2949.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2890.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2863.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2806.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2753.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2746.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2733.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2670.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2632.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2584.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2580.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2570.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2556.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2534.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2527.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2514.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2500.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2494.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2486.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2482.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2482.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2463.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2446.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2403.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2399.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2395.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2386.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2306.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2306.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2301.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2295.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2275.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2273.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2206.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2162.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2154.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2152.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2150.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2138.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2137.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2129.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2128.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2127.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2126.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2120.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2120.4
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2118.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2107.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2083.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2064.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2057.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2049.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2045.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2023.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2023.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2016.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2012.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2005.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2002.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1999.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1998.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1998.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1982.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1968.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1964.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1952.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1949.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1929.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1928.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1926.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1920.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1918.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1914.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1904.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1904.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1903.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1897.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1889.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1889.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1876.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1873.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1870.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1864.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1850.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1847.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1847.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1845.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1841.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1840.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1837.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1836.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1826.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1816.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1798.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1787.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1782.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1777.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1771.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1756.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1748.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1741.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1740.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1736.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1726.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1724.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1722.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1707.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1700.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1691.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1680.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1677.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1670.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1659.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1650.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1637.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1615.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1610.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1605.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1605.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1595.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1595.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1569.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1569.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1553.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1550.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 1548.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1543.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1533.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1523.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1521.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1519.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1508.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1504.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1495.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1477.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1467.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1458.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1451.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1444.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1435.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1391.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1361.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1349.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1335.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1294.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1288.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1277.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1206.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1100.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 24.9
FF:10204-103F6 68 years, female 24.9

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