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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
287.0
Sample id
Sample description
nTPM
Amygdala nTPM: 189.8
2814
Male, age 76, right hemisphere
348.5
2517
Female, age 94, left hemisphere
209.8
1987
Female, age 91, left hemisphere
200.4
2514
Male, age 75, right hemisphere
96.0
2695
Female, age 67, right hemisphere
94.6
Basal amygdala nTPM: 287.0
2243
Female, age 91, right hemisphere
417.7
2685
Female, age 94, left hemisphere
378.0
1955
Male, age 76, both hemispheres
302.3
2110
Male, age 80, left hemisphere
284.1
2827
Female, age 67, right hemisphere
201.5
2609
Male, age 75, right hemisphere
138.7
Central amygdala nTPM: 246.2
2826
Female, age 94, left hemisphere
341.8
1905
Male, age 76, both hemispheres
309.6
2239
Male, age 80, left hemisphere
275.8
2701
Female, age 91, right hemisphere
204.6
2515
Male, age 75, right hemisphere
99.1
Corticomedial amygdala nTPM: 274.7
2829
Male, age 80, left hemisphere
331.2
2242
Female, age 91, right hemisphere
329.4
2535
Female, age 67, right hemisphere
320.4
2429
Female, age 94, left hemisphere
308.0
2240
Male, age 76, both hemispheres
264.3
2428
Male, age 75, right hemisphere
95.0
Lateral amygdala nTPM: 215.4
2534
Female, age 94, left hemisphere
399.8
1883
Male, age 76, both hemispheres
319.4
2255
Female, age 91, right hemisphere
202.2
2256
Male, age 80, left hemisphere
192.3
2830
Female, age 67, right hemisphere
100.9
2516
Male, age 75, right hemisphere
77.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
365.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 365.3
Samples: 152
Max nTPM: 1038.1
Min nTPM: 8.2
Std nTPM: 192.0
Median nTPM: 327.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1038.1
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
887.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
886.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
868.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
752.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
749.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
742.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
704.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
691.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
657.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
644.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
638.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
637.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
632.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
629.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
610.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
610.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
609.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
603.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
594.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
575.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
567.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
564.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
563.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
550.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
540.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
538.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
538.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
528.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
523.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
515.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
507.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
506.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
501.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
499.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
497.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
496.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
495.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
491.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
489.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
489.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
482.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
476.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
471.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
463.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
462.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
457.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
457.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
456.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
455.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
439.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
436.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
429.5
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
428.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
425.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
421.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
419.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
410.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
408.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
400.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
400.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
395.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
388.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
388.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
388.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
378.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
376.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
375.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
371.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
371.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
366.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
360.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
358.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
353.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
337.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
329.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
326.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
320.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
318.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
315.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
312.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
310.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
308.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
305.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
303.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
302.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
298.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
296.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
296.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
292.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
291.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
288.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
284.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
280.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
279.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
270.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
267.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
265.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
262.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
262.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
256.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
252.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
250.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
250.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
250.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
250.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
248.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
237.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
233.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
233.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
229.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
225.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
224.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
223.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
222.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
221.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
214.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
213.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
213.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
209.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
208.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
208.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
205.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
202.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
198.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
191.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
190.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
174.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
171.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
162.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
159.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
158.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
152.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
150.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
147.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
147.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
144.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
137.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
135.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
135.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
133.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
119.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
114.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
111.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
99.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
94.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
65.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
62.8
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
48.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
28.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
27.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
8.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
367.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 367.2
Samples: 4
Max nTPM: 418.0
Min nTPM: 324.2
Sample A
Male
392.4
Sample B
Male
334.0
Sample C
Female
418.0
Sample D
Female
324.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
