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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

101.896
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:249.0 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:214.2 nTPM
Allen mouse:15.3 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA035876
Medulla oblongata mean intensity 101.896
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 99.330
Raphe magnus nucleus 74.791
Cochlear nucleus 51.115
Lateral paragigantocellular nucleus 46.838
Raphe pallidus nucleus 62.163
Facial nucleus 49.768
Hypoglossal nucleus 61.826
Ambiguus nucleus 60.347
External cuneate nucleus 54.410
Inferior olivary nucleus 64.738
Raphe obscures nucleus 60.144
Dorsal motor nucleus of vagus 101.896

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.0
Sample id Sample description nTPM
Area postrema
nTPM: 47.5
2054 Male, age 76, both hemispheres 100.9
2306 Male, age 80, both hemispheres 26.8
2799 Male, age 61, both hemispheres 14.9
Dorsal medullary reticular nucleus
nTPM: 181.1
2040 Female, age 85, both hemispheres 251.6
2373 Male, age 61, both hemispheres 163.7
2088 Male, age 76, both hemispheres 128.0
Dorsal motor vagal complex
nTPM: 132.8
2133 Female, age 91, both hemispheres 200.1
2000 Male, age 74, unknown 168.2
2813 Female, age 72, unknown 148.5
2844 Male, age 55, unknown 138.4
2797 Male, age 61, both hemispheres 116.1
2807 Female, age 85, both hemispheres 108.6
2185 Male, age 76, both hemispheres 96.1
2643 Male, age 74, both hemispheres 86.2
Gigantocellular reticular nuclei, medullary
nTPM: 208.6
2462 Male, age 74, both hemispheres 445.5
2310 Male, age 80, both hemispheres 240.9
2022 Male, age 76, right hemisphere 180.1
1876 Female, age 85, both hemispheres 173.7
2387 Female, age 91, both hemispheres 135.2
2314 Male, age 61, both hemispheres 76.1
Gigantocellular reticular nuclei, pars
nTPM: 248.4
2168 Male, age 76, both hemispheres 357.0
2084 Female, age 85, both hemispheres 225.4
2706 Male, age 80, both hemispheres 223.1
2336 Male, age 61, both hemispheres 218.7
2330 Male, age 80, both hemispheres 217.9
Inferior olive
nTPM: 70.9
2628 Female, age 91, both hemispheres 138.6
2085 Female, age 85, both hemispheres 110.3
2178 Male, age 61, both hemispheres 41.2
2563 Male, age 74, both hemispheres 34.0
2379 Male, age 80, both hemispheres 30.4
Lateral medullary reticular nucleus
nTPM: 124.9
2044 Male, age 76, both hemispheres 249.5
2804 Female, age 91, both hemispheres 129.9
2190 Female, age 85, both hemispheres 121.6
2374 Male, age 61, both hemispheres 110.6
2852 Male, age 80, both hemispheres 80.8
2305 Male, age 74, both hemispheres 56.6
Medial olivary nucleus
nTPM: 50.3
2851 Male, age 80, both hemispheres 121.8
1962 Male, age 76, both hemispheres 44.5
2138 Female, age 91, both hemispheres 22.4
1943 Male, age 61, both hemispheres 12.7
Medial vestibular nucleus
nTPM: 222.6
2624 Male, age 61, both hemispheres 283.6
2803 Female, age 91, both hemispheres 246.9
2801 Male, age 74, both hemispheres 218.8
2093 Male, age 80, both hemispheres 212.9
2743 Female, age 85, both hemispheres 202.2
2134 Male, age 76, both hemispheres 171.5
Motor hypoglossal nucleus
nTPM: 177.6
2125 Female, age 91, both hemispheres 226.1
2132 Female, age 85, both hemispheres 216.7
2461 Male, age 61, both hemispheres 199.3
2182 Male, age 80, both hemispheres 141.6
2277 Male, age 76, both hemispheres 104.1
Nucleus ambiguus
nTPM: 185.9
2096 Female, age 85, both hemispheres 321.1
2071 Male, age 76, both hemispheres 50.7
Nucleus cuneatus
nTPM: 120.2
2131 Male, age 76, both hemispheres 193.3
2562 Male, age 61, both hemispheres 192.8
2376 Male, age 61, both hemispheres 151.6
2100 Male, age 76, both hemispheres 147.5
2564 Male, age 74, both hemispheres 123.0
2381 Male, age 80, both hemispheres 98.4
2805 Female, age 91, both hemispheres 72.0
2808 Female, age 85, both hemispheres 70.3
2380 Male, age 80, both hemispheres 33.0
Nucleus gracilis
nTPM: 53.0
2627 Male, age 74, both hemispheres 73.8
2299 Female, age 85, both hemispheres 42.9
2382 Male, age 80, both hemispheres 42.4
Nucleus raphe obscurus
nTPM: 91.8
2800 Male, age 61, midline 140.8
2845 Female, age 85, midline 121.7
2142 Male, age 76, midline 12.8
Nucleus raphe pallidus
nTPM: 106.4
2183 Male, age 80, midline 161.2
1924 Male, age 61, midline 97.2
2145 Male, age 76, midline 60.9
Nucleus tractus solitarii
nTPM: 117.4
2656 Male, age 76, both hemispheres 156.3
2307 Male, age 80, both hemispheres 115.3
2144 Female, age 91, right hemisphere 114.7
2191 Female, age 85, both hemispheres 83.1
Parvicellular reticular nuclei
nTPM: 241.6
2558 Male, age 74, both hemispheres 394.9
2095 Male, age 76, both hemispheres 174.4
2119 Male, age 80, both hemispheres 155.7
Parvicellular reticular nuclei, medullary
nTPM: 210.4
2189 Female, age 91, both hemispheres 235.0
2181 Male, age 80, left hemisphere 225.6
2091 Female, age 85, both hemispheres 170.5
Peritrigeminal nucleus
nTPM: 193.8
2179 Male, age 61, both hemispheres 239.7
2136 Male, age 76, both hemispheres 174.7
2067 Female, age 85, both hemispheres 166.9
Prepositus hypoglossal nucleus
nTPM: 182.4
2855 Female, age 85, right hemisphere 190.7
2086 Male, age 80, both hemispheres 174.2
Spinal trigeminal nucleus, caudal
nTPM: 175.3
2390 Female, age 91, both hemispheres 244.8
2447 Male, age 76, both hemispheres 195.1
2642 Male, age 74, both hemispheres 153.2
2312 Male, age 61, both hemispheres 147.5
2308 Male, age 80, both hemispheres 135.7
Spinal trigeminal nucleus, interpolar
nTPM: 249.0
2389 Female, age 91, both hemispheres 310.2
2066 Male, age 76, right hemisphere 297.2
2625 Male, age 61, both hemispheres 240.7
2033 Male, age 80, both hemispheres 205.6
2386 Female, age 85, both hemispheres 191.1
Spinal vestibular nucleus
nTPM: 198.4
2186 Female, age 91, both hemispheres 261.9
2796 Male, age 61, both hemispheres 260.9
2780 Male, age 80, both hemispheres 206.5
2806 Female, age 85, both hemispheres 198.8
2748 Male, age 76, both hemispheres 167.3
2384 Male, age 74, both hemispheres 95.2
Superior vestibular nucleus
nTPM: 115.2
2015 Male, age 80, both hemispheres 138.7
2061 Male, age 76, both hemispheres 132.0
2383 Male, age 74, both hemispheres 75.1
Ventral medullary reticular nucleus
nTPM: 123.2
2060 Male, age 76, both hemispheres 155.8
2372 Male, age 61, both hemispheres 90.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 159.2
2741 Female, age 85, both hemispheres 213.5
1986 Male, age 76, both hemispheres 191.3
2180 Male, age 61, both hemispheres 151.6
2302 Female, age 91, both hemispheres 149.9
2118 Male, age 80, both hemispheres 89.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 79.2
FF:10038-101F2 18-64 years, mixed 128.3
FF:10155-103A2 76 years, female 72.8
FF:10174-103C3 60 years, female 36.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 214.2
Samples: 4

Max nTPM: 272.2
Min nTPM: 83.1
Sample A Female 256.9
Sample B Female 272.2
Sample C Male 244.5
Sample D Male 83.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 15.3
100144408 Antisense, RP_110407_01_G07, Mouse strain C57BL/6J (56 days, male) 15.3

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