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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

138.232
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:273.6 nTPM
HPA Brain:453.6 nTPM
GTEx:273.6 nTPM
FANTOM5:167.7 Scaled Tags Per Million
Pig:382.0 nTPM
Mouse:372.3 nTPM
Allen mouse:23.7 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035876Antibody CAB002681
Glial cells Not detectedMedium
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA035876
Hippocampal formation mean intensity 138.232
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 138.232
Molecular layer of the dentate gyrus 131.569
Granular dentate gyrus 83.638
CA1 - oriens layer 124.342
CA1 - pyramidal layer 97.738
CA1 - radiatum layer 134.938
CA2 - oriens layer 115.208
CA2 - pyramidal layer 96.340
CA2 - radiatum layer 131.253
CA3 - oriens layer 92.786
CA3 - pyramidal layer 68.755
CA3 - radiatum layer 101.618
Stratum lucidum 124.252
Lacunosum moleculare 122.031
Subiculum 92.021

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.6
Sample id Sample description nTPM
Hippocampus
nTPM: 244.9
1898 Male, age 80, left hemisphere 340.9
2148 Female, age 91, left hemisphere 303.1
2621 Female, age 67, right hemisphere 290.5
1855 Male, age 76, left hemisphere 263.4
2529 Female, age 94, left hemisphere 146.4
1911 Female, age 85, right hemisphere 124.9
Dentate gyrus
nTPM: 284.5
2531 Female, age 67, both hemispheres 352.1
1927 Female, age 91, both hemispheres 333.8
2530 Female, age 94, left hemisphere 333.4
2246 Female, age 85, both hemispheres 247.9
2528 Male, age 74, both hemispheres 223.3
2010 Male, age 76, both hemispheres 216.3
Entorhinal gyrus
nTPM: 327.0
2613 Female, age 94, left hemisphere 428.4
2764 Male, age 80, right hemisphere 407.4
2686 Male, age 75, right hemisphere 346.3
1787 Male, age 76, left hemisphere 299.6
1938 Female, age 85, left hemisphere 299.4
2117 Female, age 91, right hemisphere 181.1
Hippocampus, CA1
nTPM: 236.7
1873 Female, age 85, both hemispheres 270.7
2045 Male, age 76, both hemispheres 263.2
2749 Male, age 80, left hemisphere 233.2
2082 Female, age 91, right hemisphere 228.6
2527 Male, age 74, both hemispheres 187.8
Hippocampus, CA2
nTPM: 232.8
2437 Female, age 94, left hemisphere 335.0
1892 Male, age 76, both hemispheres 325.6
1940 Female, age 85, left hemisphere 210.3
1963 Male, age 80, left hemisphere 206.4
2113 Female, age 91, right hemisphere 204.8
2249 Male, age 74, both hemispheres 114.8
Hippocampus, CA3
nTPM: 260.2
2620 Female, age 94, left hemisphere 498.1
2861 Female, age 67, both hemispheres 382.6
1867 Male, age 76, both hemispheres 224.9
1891 Female, age 85, both hemispheres 183.9
2436 Male, age 74, both hemispheres 145.5
2137 Male, age 80, left hemisphere 125.9
Parahippocampal cortex
nTPM: 358.3
2245 Female, age 91, both hemispheres 452.1
2622 Female, age 67, right hemisphere 446.8
2693 Female, age 94, both hemispheres 425.2
1850 Male, age 80, both hemispheres 395.5
2532 Female, age 72, left hemisphere 357.9
1990 Female, age 91, right hemisphere 351.2
1933 Female, age 85, both hemispheres 333.3
2250 Female, age 67, right hemisphere 330.7
2692 Male, age 74, both hemispheres 257.5
2018 Male, age 76, both hemispheres 232.6
Perirhinal gyrus
nTPM: 453.6
1847 Female, age 91, left hemisphere 528.8
1794 Male, age 80, right hemisphere 503.1
2521 Female, age 94, right hemisphere 444.0
1841 Female, age 85, right hemisphere 426.8
2848 Male, age 76, right hemisphere 365.2
Subiculum
nTPM: 223.1
2438 Female, age 94, left hemisphere 308.0
2619 Male, age 74, both hemispheres 292.6
1977 Female, age 85, both hemispheres 272.8
1901 Male, age 80, both hemispheres 179.0
2729 Female, age 91, right hemisphere 175.0
2042 Male, age 76, both hemispheres 111.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 273.6
Samples: 197

Max nTPM: 893.7
Min nTPM: 9.8
Std nTPM: 193.5
Median nTPM: 226.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 893.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 848.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 841.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 725.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 711.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 705.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 704.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 691.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 682.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 640.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 613.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 599.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 586.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 582.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 570.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 553.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 549.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 546.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 544.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 534.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 524.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 523.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 519.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 518.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 518.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 511.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 505.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 505.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 497.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 497.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 491.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 488.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 487.9
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 487.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 466.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 461.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 460.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 458.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 453.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 451.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 434.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 433.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 427.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 416.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 416.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 415.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 414.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 411.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 397.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 386.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 385.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 383.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 382.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 380.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 378.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 378.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 377.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 373.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 369.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 367.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 366.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 364.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 360.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 356.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 354.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 353.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 353.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 352.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 349.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 338.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 329.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 329.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 329.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 325.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 321.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 319.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 314.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 310.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 307.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 306.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 303.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 302.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 299.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 295.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 294.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 292.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 286.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 282.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 275.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 269.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 268.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 266.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 260.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 259.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 243.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 243.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 239.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 236.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 226.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 214.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 211.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 210.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 209.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 208.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 207.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 205.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 198.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 197.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 197.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 196.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 192.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 191.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 189.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 187.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 184.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 183.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 180.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 175.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 170.9
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 168.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 167.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 167.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 166.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 166.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 163.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 161.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 160.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 156.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 155.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 150.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 149.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 146.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 144.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 144.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 143.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 141.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 138.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 138.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 135.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 129.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 122.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 121.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 121.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 119.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 117.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 116.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 109.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 108.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 108.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 106.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 106.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 105.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 104.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 104.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 102.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 100.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 98.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 98.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 97.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 94.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 92.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 90.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 88.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 80.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 78.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 76.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 75.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 75.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 73.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 73.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 71.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 63.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 61.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 60.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 55.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 52.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 51.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 51.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 46.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 44.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 43.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 41.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 38.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 38.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 33.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 33.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 31.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 30.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 29.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 29.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 29.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 25.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 22.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 17.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 13.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 9.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 167.7
FF:10169-103B7 60 years, female 213.9
FF:10153-102I9 76 years, female 121.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.0
Pig sample Sample description nTPM
Subiculum
nTPM: 268.4
Samples: 4

Max nTPM: 377.6
Min nTPM: 212.0
Sample A Female 377.6
Sample B Female 212.0
Sample C Male 249.9
Sample D Male 234.1
Dorsal hippocampus
nTPM: 254.3
Samples: 4

Max nTPM: 266.7
Min nTPM: 239.2
Sample A Female 262.4
Sample B Female 239.2
Sample C Male 266.7
Sample D Male 248.8
Entorhinal cortex
nTPM: 382.0
Samples: 4

Max nTPM: 440.4
Min nTPM: 297.5
Sample A Female 440.4
Sample B Female 393.1
Sample C Male 297.5
Sample D Male 397.1
Ventral hippocampus
nTPM: 273.9
Samples: 4

Max nTPM: 375.3
Min nTPM: 178.3
Sample A Female 290.6
Sample B Female 178.3
Sample C Male 375.3
Sample D Male 251.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 372.3
Samples: 4

Max nTPM: 411.0
Min nTPM: 333.8
Sample A Male 369.6
Sample B Male 374.6
Sample C Female 333.8
Sample D Female 411.0
Hippocampal formation
nTPM: 235.5
Samples: 4

Max nTPM: 256.9
Min nTPM: 212.8
Sample A Male 256.9
Sample B Male 212.8
Sample C Female 222.1
Sample D Female 250.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.7
100144408 Antisense, RP_110407_01_G07, Mouse strain C57BL/6J (56 days, male) 23.7

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