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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
389.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 153.0
2301
Female, age 85, both hemispheres
185.9
1984
Male, age 76, both hemispheres
183.7
2188
Female, age 91, both hemispheres
139.8
2090
Male, age 80, both hemispheres
102.5
Dorsal cochlear nucleus nTPM: 127.0
2370
Male, age 61, both hemispheres
145.5
2187
Female, age 91, both hemispheres
137.5
2058
Male, age 76, both hemispheres
136.6
2802
Male, age 74, right hemisphere
115.4
2378
Male, age 80, both hemispheres
100.2
Dorsal tegmental nucleus nTPM: 141.7
2083
Male, age 80, both hemispheres
171.8
2358
Male, age 61, both hemispheres
163.9
1936
Male, age 76, left hemisphere
149.2
2326
Male, age 74, both hemispheres
81.9
Dorsolateral tegmental area nTPM: 121.2
2141
Male, age 76, both hemispheres
185.0
2654
Male, age 80, both hemispheres
163.0
2751
Female, age 85, both hemispheres
121.4
2360
Male, age 74, both hemispheres
83.1
2337
Male, age 61, both hemispheres
53.8
Kolliker-Fuse nucleus nTPM: 170.1
2793
Female, age 91, left hemisphere
233.5
2163
Male, age 80, both hemispheres
176.5
2315
Male, age 76, right hemisphere
100.2
Lateral lemniscal nuclei nTPM: 305.5
2453
Male, age 74, right hemisphere
394.6
2169
Male, age 76, both hemispheres
359.5
2036
Male, age 80, both hemispheres
295.0
2746
Female, age 85, left hemisphere
268.5
2320
Female, age 91, left hemisphere
209.9
Lateral parabrachial nucleus nTPM: 183.4
2139
Female, age 85, right hemisphere
313.3
2790
Male, age 61, both hemispheres
184.3
2013
Male, age 80, both hemispheres
173.2
2792
Male, age 76, both hemispheres
63.0
Lateral vestibular nucleus nTPM: 154.8
2184
Male, age 76, both hemispheres
166.5
2311
Male, age 80, both hemispheres
143.0
Locus coeruleus nTPM: 216.1
2720
Male, age 74, both hemispheres
327.8
2123
Female, age 91, both hemispheres
318.3
2162
Male, age 80, both hemispheres
208.8
1980
Male, age 76, both hemispheres
185.5
2014
Male, age 55, unknown
173.5
2317
Female, age 72, unknown
160.2
2788
Male, age 74, unknown
138.6
Medial parabrachial nucleus nTPM: 178.0
2854
Male, age 80, both hemispheres
247.1
2156
Male, age 61, both hemispheres
205.5
2786
Male, age 76, both hemispheres
162.2
2170
Female, age 91, both hemispheres
148.2
2463
Female, age 85, right hemisphere
127.2
Medial periolivary nuclei nTPM: 271.4
2171
Female, age 85, both hemispheres
489.0
2063
Male, age 76, both hemispheres
322.6
2791
Male, age 74, right hemisphere
226.2
2458
Female, age 91, both hemispheres
178.4
2081
Male, age 80, both hemispheres
141.0
Motor facial nucleus nTPM: 295.0
2365
Male, age 74, right hemisphere
359.2
2327
Male, age 80, both hemispheres
356.0
2062
Male, age 76, both hemispheres
352.4
2697
Female, age 85, both hemispheres
331.5
2795
Female, age 91, both hemispheres
204.0
2126
Male, age 61, both hemispheres
166.8
Motor trigeminal nucleus nTPM: 214.8
2079
Male, age 80, both hemispheres
284.7
2560
Male, age 74, both hemispheres
255.1
2335
Male, age 61, both hemispheres
215.2
2309
Male, age 76, both hemispheres
168.9
2321
Female, age 91, both hemispheres
150.2
Nuclei of the trapezoid body nTPM: 332.9
2159
Male, age 61, both hemispheres
473.8
2735
Female, age 85, both hemispheres
413.8
1983
Male, age 76, both hemispheres
333.2
2166
Male, age 80, both hemispheres
250.0
2368
Female, age 91, both hemispheres
193.6
Nucleus raphe magnus nTPM: 389.0
2172
Female, age 85, both hemispheres
547.5
2160
Male, age 61, both hemispheres
518.0
2455
Male, age 74, both hemispheres
477.8
2328
Male, age 80, both hemispheres
314.3
2051
Male, age 76, both hemispheres
273.7
2459
Female, age 91, both hemispheres
202.9
Paramedian reticular nucleus nTPM: 216.3
2050
Female, age 85, both hemispheres
322.0
2313
Male, age 61, both hemispheres
253.1
2057
Male, age 80, both hemispheres
181.5
2052
Male, age 76, both hemispheres
108.4
Pedunculopontine tegmental nucleus nTPM: 161.7
1921
Female, age 85, both hemispheres
187.9
2334
Male, age 80, both hemispheres
164.2
2338
Male, age 61, both hemispheres
133.1
Pontine nuclei nTPM: 293.4
2787
Female, age 85, both hemispheres
538.0
1863
Male, age 55, unknown
353.0
2727
Male, age 61, right hemisphere
328.7
1968
Male, age 76, left hemisphere
324.2
2109
Female, age 72, unknown
253.0
2454
Male, age 74, left hemisphere
218.5
2115
Male, age 80, left hemisphere
193.2
2319
Female, age 91, both hemispheres
138.7
Pontine raphe nucleus nTPM: 242.4
2122
Female, age 85, midline
288.5
2853
Male, age 76, midline
196.4
Posteroventral cochlear nucleus nTPM: 117.4
2752
Female, age 85, both hemispheres
236.1
2070
Male, age 76, both hemispheres
156.6
2371
Male, age 61, both hemispheres
121.1
2341
Male, age 80, both hemispheres
60.9
2135
Female, age 91, both hemispheres
12.2
Principal sensory trigeminal nucleus nTPM: 270.5
2158
Male, age 61, both hemispheres
436.9
2008
Male, age 80, left hemisphere
302.1
2367
Female, age 91, left hemisphere
185.0
2324
Male, age 76, both hemispheres
158.0
Reticular pontine nucleus, caudal nTPM: 228.3
2332
Male, age 80, right hemisphere
367.4
2092
Male, age 76, both hemispheres
233.3
2457
Female, age 91, both hemispheres
182.3
2559
Male, age 74, both hemispheres
130.3
Reticular pontine nucleus, oral nTPM: 199.2
2361
Male, age 74, both hemispheres
290.2
2012
Female, age 85, both hemispheres
227.0
2366
Female, age 91, both hemispheres
169.9
2167
Male, age 76, both hemispheres
166.7
1939
Male, age 80, both hemispheres
142.0
Reticulotegmental nucleus nTPM: 204.2
2325
Male, age 76, both hemispheres
251.9
2333
Male, age 80, both hemispheres
196.1
2452
Male, age 74, both hemispheres
189.8
2322
Female, age 91, both hemispheres
178.9
Spinal trigeminal nucleus, oral nTPM: 189.9
2737
Female, age 85, both hemispheres
201.5
1978
Male, age 76, both hemispheres
193.2
2164
Male, age 80, both hemispheres
175.0
Subcoeruleus area nTPM: 197.4
2323
Female, age 91, left hemisphere
283.0
1958
Male, age 80, both hemispheres
249.4
2089
Male, age 76, left hemisphere
237.1
2451
Male, age 74, both hemispheres
129.2
2369
Female, age 85, left hemisphere
88.3
Superior olive nTPM: 270.7
1875
Female, age 85, both hemispheres
364.4
2329
Male, age 80, right hemisphere
275.9
2561
Female, age 91, both hemispheres
259.3
2364
Male, age 74, right hemisphere
245.7
2020
Male, age 76, both hemispheres
208.0
Ventral periolivary nuclei nTPM: 315.6
2130
Female, age 85, both hemispheres
410.4
2165
Male, age 80, both hemispheres
395.7
2794
Female, age 91, left hemisphere
283.5
2023
Male, age 76, both hemispheres
172.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 239.1
2449
Male, age 74, both hemispheres
399.1
2840
Female, age 85, both hemispheres
264.4
1959
Male, age 76, both hemispheres
259.0
2161
Male, age 80, both hemispheres
246.6
2359
Male, age 61, both hemispheres
138.9
2456
Female, age 91, both hemispheres
126.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
416.0
Pig sample
Sample description
nTPM
Pons nTPM: 416.0
Samples: 4
Max nTPM: 640.9
Min nTPM: 220.2
Sample A
Female
640.9
Sample B
Female
220.2
Sample C
Male
234.4
Sample D
Male
568.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
