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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:57.5 nTPM
HPA Brain:114.4 nTPM
GTEx:57.5 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:102.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.9
2194 Female, age 79, both hemispheres 138.9
1981 Female, age 72, midline 95.9
2816 Male, age 47, midline 89.3
2048 Male, age 55, midline 87.5
2565 Male, age 75, midline 38.2
Cervical spinal cord, dorsal horn
nTPM: 114.4
2297 Male, age 75, both hemispheres 195.0
2721 Male, age 90, both hemispheres 170.2
1877 Male, age 55, unknown 115.5
2069 Male, age 47, both hemispheres 113.9
2173 Female, age 72, unknown 80.6
2296 Male, age 66, both hemispheres 11.0
Cervical spinal cord, ventral horn
nTPM: 77.7
2068 Male, age 55, unknown 144.7
2820 Female, age 79, both hemispheres 135.7
2295 Male, age 66, both hemispheres 62.2
2480 Male, age 75, both hemispheres 54.6
2809 Male, age 90, both hemispheres 37.0
2098 Female, age 72, unknown 31.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 57.5
Samples: 159

Max nTPM: 329.4
Min nTPM: 2.1
Std nTPM: 66.2
Median nTPM: 31.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 329.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 299.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 260.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 241.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 234.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 228.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 222.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 218.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 208.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 207.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 195.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 190.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 185.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 174.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 172.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 157.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 149.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 148.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 128.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 123.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 120.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 118.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 118.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 110.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 99.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 98.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 95.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 93.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 89.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 87.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 86.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 84.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 84.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 80.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 80.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 77.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 76.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 72.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 69.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 67.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 67.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 67.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 61.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 61.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 58.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 56.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 54.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 51.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 48.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 48.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 48.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 46.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 45.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 44.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 43.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 43.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 41.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 40.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 40.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 40.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 39.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 37.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 36.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 35.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 35.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 34.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 32.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 31.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 31.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 31.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 30.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 29.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 29.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 29.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 28.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 28.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 27.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 26.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 26.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 25.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 24.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 22.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 21.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 20.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 20.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 20.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 20.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 19.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 18.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 18.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 16.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 16.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 15.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 14.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 14.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 14.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 14.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 13.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 12.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 12.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 12.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 12.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 11.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 11.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 11.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 11.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 10.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 10.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 8.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 8.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 7.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 7.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 7.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 6.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 6.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 6.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 6.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 6.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 5.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 5.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 4.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 4.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 4.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 3.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 3.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 3.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 3.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.9
FF:10181-103D1 60 years, female 54.2
FF:10159-103A6 76 years, female 11.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 102.9
Samples: 4

Max nTPM: 186.4
Min nTPM: 13.1
Sample A Female 186.4
Sample B Female 37.9
Sample C Male 13.1
Sample D Male 174.1
Ventral spinal cord
nTPM: 44.0
Samples: 4

Max nTPM: 59.2
Min nTPM: 24.8
Sample A Female 58.6
Sample B Female 33.5
Sample C Male 59.2
Sample D Male 24.8

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