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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

66.315
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:200.2 nTPM
HPA Brain:442.1 nTPM
GTEx:200.2 nTPM
FANTOM5:1382.6 Scaled Tags Per Million
Pig:754.2 nTPM
Mouse:668.9 nTPM
Allen mouse:22.8 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA012828
Amygdala mean intensity 66.315
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 66.315
Basal medial amygdaloid nucleus 29.961
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 21.600
Cortical amygdala 51.595
Central amygdala 30.138
Medial amygdaloid nucleus 28.137

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

442.1
Sample id Sample description nTPM
Amygdala
nTPM: 273.3
1987 Female, age 91, left hemisphere 410.9
2517 Female, age 94, left hemisphere 319.7
2814 Male, age 76, right hemisphere 261.9
2514 Male, age 75, right hemisphere 236.6
2695 Female, age 67, right hemisphere 137.3
Basal amygdala
nTPM: 391.6
2243 Female, age 91, right hemisphere 678.3
2110 Male, age 80, left hemisphere 498.7
2685 Female, age 94, left hemisphere 405.0
1955 Male, age 76, both hemispheres 314.5
2827 Female, age 67, right hemisphere 239.8
2609 Male, age 75, right hemisphere 213.5
Central amygdala
nTPM: 310.7
2239 Male, age 80, left hemisphere 449.8
2701 Female, age 91, right hemisphere 444.9
1905 Male, age 76, both hemispheres 243.7
2515 Male, age 75, right hemisphere 209.9
2826 Female, age 94, left hemisphere 205.1
Corticomedial amygdala
nTPM: 442.1
2829 Male, age 80, left hemisphere 609.8
2242 Female, age 91, right hemisphere 594.7
2429 Female, age 94, left hemisphere 436.5
2535 Female, age 67, right hemisphere 413.0
2240 Male, age 76, both hemispheres 390.7
2428 Male, age 75, right hemisphere 208.0
Lateral amygdala
nTPM: 247.2
2255 Female, age 91, right hemisphere 380.6
1883 Male, age 76, both hemispheres 293.0
2534 Female, age 94, left hemisphere 275.6
2256 Male, age 80, left hemisphere 248.1
2516 Male, age 75, right hemisphere 159.2
2830 Female, age 67, right hemisphere 126.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.2
Samples: 152

Max nTPM: 489.2
Min nTPM: 15.6
Std nTPM: 115.5
Median nTPM: 168.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 489.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 483.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 481.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 467.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 461.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 444.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 434.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 414.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 413.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 407.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 402.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 402.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 401.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 397.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 384.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 384.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 375.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 372.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 369.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 357.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 352.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 346.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 342.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 340.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 338.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 310.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 300.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 297.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 295.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 292.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 291.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 289.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 288.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 288.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 286.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 286.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 279.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 271.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 267.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 264.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 264.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 264.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 263.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 260.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 259.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 257.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 254.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 250.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 248.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 247.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 239.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 237.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 232.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 229.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 223.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 219.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 218.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 217.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 214.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 202.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 199.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 189.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 188.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 188.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 187.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 183.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 183.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 181.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 173.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 171.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 167.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 167.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 165.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 159.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 158.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 157.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 156.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 153.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 150.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 149.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 149.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 148.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 144.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 143.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 136.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 136.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 135.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 130.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 124.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 110.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 109.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 109.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 108.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 102.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 101.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 97.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 93.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 90.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 77.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 75.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 73.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 66.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 54.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 54.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 48.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 46.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 43.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 42.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 32.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 31.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 23.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 22.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1382.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1382.6
FF:10151-102I7 76 years, female 1382.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

754.2
Pig sample Sample description nTPM
Amygdala
nTPM: 754.2
Samples: 4

Max nTPM: 896.0
Min nTPM: 637.1
Sample A Female 896.0
Sample B Female 637.1
Sample C Male 695.8
Sample D Male 788.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

668.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 668.9
Samples: 4

Max nTPM: 688.4
Min nTPM: 642.7
Sample A Male 675.5
Sample B Male 642.7
Sample C Female 668.8
Sample D Female 688.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.8
74272037 Antisense, RP_060202_01_A04, Mouse strain C57BL/6J (56 days, male) 24.2
69549641 Antisense, RP_050309_02_D02, Mouse strain C57BL/6J (56 days, male) 21.5

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