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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:397.0 nTPM
GTEx:397.0 nTPM
FANTOM5:184.6 Scaled Tags Per Million
Pig:168.2 nTPM
Mouse:212.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 397.0
Samples: 105

Max nTPM: 617.5
Min nTPM: 225.1
Std nTPM: 85.2
Median nTPM:
490_1 67 years, female 617.5
415_1 77 years, female 605.2
217_1 76 years, male 583.0
414_1 84 years, female 582.1
32_1 67 years, male 568.6
468_1 89 years, male 560.6
115_1 83 years, male 535.0
466_1 57 years, female 531.0
126_1 63 years, male 530.3
172_1 72 years, female 518.3
162_1 79 years, female 515.4
405_1 91 years, male 510.5
347_1 72 years, male 498.3
413_1 59 years, female 497.4
491_1 89 years, female 495.2
229_1 69 years, female 494.4
149_1 88 years, male 484.2
425_1 59 years, female 482.0
142_1 61 years, female 480.4
81_1 67 years, male 477.3
6_1 73 years, female 475.7
9_1 66 years, female 469.9
526_1 61 years, male 466.7
447_1 81 years, male 460.4
237_1 82 years, male 457.9
177_1 74 years, male 456.4
246_1 77 years, male 455.3
117_1 61 years, male 454.6
503_1 68 years, male 449.2
375_1 74 years, female 444.5
163_1 78 years, male 436.3
243_1 75 years, male 434.7
18_1 88 years, male 434.3
324_1 76 years, male 433.4
316_1 62 years, male 433.3
286_1 68 years, female 425.7
386_1 76 years, male 425.3
153_1 70 years, female 424.2
254_1 77 years, female 423.2
406_1 79 years, male 418.0
518_1 75 years, female 411.8
389_1 86 years, female 411.4
43_1 64 years, female 407.7
145_1 84 years, male 405.2
265_1 87 years, male 403.3
355_1 70 years, female 401.6
349_1 83 years, male 396.7
350_1 84 years, female 395.6
352_1 62 years, male 395.1
335_1 73 years, female 393.6
315_1 62 years, female 392.2
348_1 84 years, male 391.9
109_1 81 years, female 390.8
35_1 74 years, female 390.1
517_1 88 years, male 389.6
480_1 63 years, male 385.8
89_1 63 years, male 384.1
139_1 64 years, female 376.1
291_1 76 years, male 374.4
251_1 78 years, male 366.1
318_1 68 years, male 365.2
266_1 85 years, male 364.0
404_1 82 years, female 363.9
311_1 78 years, male 362.9
396_1 62 years, male 362.3
321_1 62 years, female 357.8
119_1 70 years, female 356.7
307_1 66 years, female 356.5
99_1 64 years, male 355.4
314_1 67 years, male 355.1
377_1 82 years, female 353.5
499_1 55 years, female 352.3
173_1 67 years, male 349.2
292_1 71 years, male 344.9
313_1 79 years, female 344.9
317_1 60 years, male 344.6
379_1 60 years, male 340.8
319_1 81 years, male 340.0
42_1 85 years, male 339.5
137_1 83 years, male 334.4
120_1 70 years, female 333.6
354_1 81 years, female 328.6
501_1 88 years, male 325.5
495_1 57 years, female 320.2
2_1 77 years, female 318.0
189_1 76 years, male 316.5
320_1 89 years, female 315.0
376_1 75 years, female 311.2
384_1 83 years, male 309.4
351_1 91 years, male 308.8
356_1 87 years, female 304.1
17_1 71 years, male 301.9
394_1 75 years, female 298.3
322_1 76 years, male 294.0
218_1 71 years, female 290.5
4_1 88 years, female 288.0
264_1 73 years, female 286.7
288_1 66 years, female 283.1
293_1 68 years, female 282.4
308_1 70 years, female 270.5
353_1 82 years, female 265.7
506_1 65 years, male 260.0
41_1 94 years, female 254.8
452_1 88 years, female 243.9
295_1 61 years, female 225.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 184.6
FF:10030-101E3 24-65 years, mixed 184.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.2
Pig sample Sample description nTPM
Retina
nTPM: 168.2
Samples: 4

Max nTPM: 176.0
Min nTPM: 153.1
Sample A Female 153.1
Sample B Female 176.0
Sample C Male 174.4
Sample D Male 169.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.2
Mouse sample Sample description nTPM
Retina
nTPM: 212.2
Samples: 4

Max nTPM: 251.9
Min nTPM: 190.3
Sample A Male 204.5
Sample B Male 202.2
Sample C Female 190.3
Sample D Female 251.9

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