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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

61.964
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:380.6 nTPM
FANTOM5:336.1 Scaled Tags Per Million
Pig:293.0 nTPM
Allen mouse:13.8 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA012828
Medulla oblongata mean intensity 61.964
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 14.353
Raphe magnus nucleus 13.636
Cochlear nucleus 19.908
Lateral paragigantocellular nucleus 24.159
Raphe pallidus nucleus 18.607
Facial nucleus 61.964
Hypoglossal nucleus 28.170
Ambiguus nucleus 9.432
External cuneate nucleus 15.035
Inferior olivary nucleus 2.726
Raphe obscures nucleus 23.369
Dorsal motor nucleus of vagus 17.998

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

380.6
Sample id Sample description nTPM
Area postrema
nTPM: 118.1
2054 Male, age 76, both hemispheres 280.4
2799 Male, age 61, both hemispheres 41.6
2306 Male, age 80, both hemispheres 32.3
Dorsal medullary reticular nucleus
nTPM: 283.0
2040 Female, age 85, both hemispheres 374.7
2088 Male, age 76, both hemispheres 265.3
2373 Male, age 61, both hemispheres 208.9
Dorsal motor vagal complex
nTPM: 266.3
2133 Female, age 91, both hemispheres 538.4
2813 Female, age 72, unknown 368.1
2844 Male, age 55, unknown 313.7
2000 Male, age 74, unknown 297.6
2807 Female, age 85, both hemispheres 188.5
2643 Male, age 74, both hemispheres 151.5
2185 Male, age 76, both hemispheres 142.3
2797 Male, age 61, both hemispheres 130.2
Gigantocellular reticular nuclei, medullary
nTPM: 241.8
2462 Male, age 74, both hemispheres 344.2
2022 Male, age 76, right hemisphere 337.3
1876 Female, age 85, both hemispheres 282.5
2310 Male, age 80, both hemispheres 217.2
2387 Female, age 91, both hemispheres 154.9
2314 Male, age 61, both hemispheres 114.4
Gigantocellular reticular nuclei, pars
nTPM: 254.0
2084 Female, age 85, both hemispheres 373.4
2168 Male, age 76, both hemispheres 349.3
2336 Male, age 61, both hemispheres 246.5
2706 Male, age 80, both hemispheres 154.7
2330 Male, age 80, both hemispheres 146.0
Inferior olive
nTPM: 91.0
2085 Female, age 85, both hemispheres 142.6
2628 Female, age 91, both hemispheres 107.8
2178 Male, age 61, both hemispheres 80.5
2563 Male, age 74, both hemispheres 64.0
2379 Male, age 80, both hemispheres 60.3
Lateral medullary reticular nucleus
nTPM: 162.0
2044 Male, age 76, both hemispheres 288.0
2190 Female, age 85, both hemispheres 187.0
2804 Female, age 91, both hemispheres 149.3
2374 Male, age 61, both hemispheres 139.0
2852 Male, age 80, both hemispheres 109.4
2305 Male, age 74, both hemispheres 99.2
Medial olivary nucleus
nTPM: 74.6
2851 Male, age 80, both hemispheres 117.6
1962 Male, age 76, both hemispheres 76.8
2138 Female, age 91, both hemispheres 54.2
1943 Male, age 61, both hemispheres 50.0
Medial vestibular nucleus
nTPM: 316.3
2134 Male, age 76, both hemispheres 380.4
2803 Female, age 91, both hemispheres 351.4
2624 Male, age 61, both hemispheres 302.3
2801 Male, age 74, both hemispheres 301.1
2743 Female, age 85, both hemispheres 290.7
2093 Male, age 80, both hemispheres 271.9
Motor hypoglossal nucleus
nTPM: 334.0
2461 Male, age 61, both hemispheres 438.5
2132 Female, age 85, both hemispheres 380.9
2125 Female, age 91, both hemispheres 322.6
2277 Male, age 76, both hemispheres 301.4
2182 Male, age 80, both hemispheres 226.7
Nucleus ambiguus
nTPM: 200.2
2096 Female, age 85, both hemispheres 298.5
2071 Male, age 76, both hemispheres 101.8
Nucleus cuneatus
nTPM: 151.8
2131 Male, age 76, both hemispheres 248.2
2562 Male, age 61, both hemispheres 211.9
2100 Male, age 76, both hemispheres 191.1
2376 Male, age 61, both hemispheres 160.8
2381 Male, age 80, both hemispheres 157.1
2805 Female, age 91, both hemispheres 136.5
2564 Male, age 74, both hemispheres 110.1
2808 Female, age 85, both hemispheres 98.2
2380 Male, age 80, both hemispheres 52.0
Nucleus gracilis
nTPM: 76.7
2627 Male, age 74, both hemispheres 105.3
2382 Male, age 80, both hemispheres 62.5
2299 Female, age 85, both hemispheres 62.2
Nucleus raphe obscurus
nTPM: 126.7
2800 Male, age 61, midline 181.2
2845 Female, age 85, midline 158.1
2142 Male, age 76, midline 40.7
Nucleus raphe pallidus
nTPM: 150.5
2183 Male, age 80, midline 282.2
1924 Male, age 61, midline 107.6
2145 Male, age 76, midline 61.6
Nucleus tractus solitarii
nTPM: 284.2
2656 Male, age 76, both hemispheres 353.8
2144 Female, age 91, right hemisphere 338.6
2191 Female, age 85, both hemispheres 232.1
2307 Male, age 80, both hemispheres 212.2
Parvicellular reticular nuclei
nTPM: 248.2
2119 Male, age 80, both hemispheres 250.2
2558 Male, age 74, both hemispheres 249.8
2095 Male, age 76, both hemispheres 244.6
Parvicellular reticular nuclei, medullary
nTPM: 380.6
2189 Female, age 91, both hemispheres 403.4
2091 Female, age 85, both hemispheres 391.1
2181 Male, age 80, left hemisphere 347.3
Peritrigeminal nucleus
nTPM: 227.3
2179 Male, age 61, both hemispheres 265.0
2067 Female, age 85, both hemispheres 215.3
2136 Male, age 76, both hemispheres 201.5
Prepositus hypoglossal nucleus
nTPM: 254.1
2855 Female, age 85, right hemisphere 302.2
2086 Male, age 80, both hemispheres 205.9
Spinal trigeminal nucleus, caudal
nTPM: 267.6
2390 Female, age 91, both hemispheres 488.1
2447 Male, age 76, both hemispheres 252.5
2642 Male, age 74, both hemispheres 219.5
2308 Male, age 80, both hemispheres 200.2
2312 Male, age 61, both hemispheres 177.8
Spinal trigeminal nucleus, interpolar
nTPM: 377.2
2625 Male, age 61, both hemispheres 520.6
2066 Male, age 76, right hemisphere 397.5
2386 Female, age 85, both hemispheres 337.2
2389 Female, age 91, both hemispheres 315.6
2033 Male, age 80, both hemispheres 315.0
Spinal vestibular nucleus
nTPM: 287.1
2186 Female, age 91, both hemispheres 375.4
2780 Male, age 80, both hemispheres 319.8
2806 Female, age 85, both hemispheres 316.2
2796 Male, age 61, both hemispheres 277.6
2748 Male, age 76, both hemispheres 266.2
2384 Male, age 74, both hemispheres 167.5
Superior vestibular nucleus
nTPM: 228.3
2015 Male, age 80, both hemispheres 255.5
2383 Male, age 74, both hemispheres 223.7
2061 Male, age 76, both hemispheres 205.8
Ventral medullary reticular nucleus
nTPM: 220.7
2060 Male, age 76, both hemispheres 305.5
2372 Male, age 61, both hemispheres 135.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 198.8
2741 Female, age 85, both hemispheres 285.7
1986 Male, age 76, both hemispheres 236.9
2180 Male, age 61, both hemispheres 210.8
2302 Female, age 91, both hemispheres 145.5
2118 Male, age 80, both hemispheres 115.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

336.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 336.1
FF:10174-103C3 60 years, female 459.0
FF:10038-101F2 18-64 years, mixed 318.0
FF:10155-103A2 76 years, female 231.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 293.0
Samples: 4

Max nTPM: 372.7
Min nTPM: 145.0
Sample A Female 364.3
Sample B Female 372.7
Sample C Male 290.0
Sample D Male 145.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.8
74272037 Antisense, RP_060202_01_A04, Mouse strain C57BL/6J (56 days, male) 15.6
69549641 Antisense, RP_050309_02_D02, Mouse strain C57BL/6J (56 days, male) 12.0

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