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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1283.6 nTPM
HPA:1283.6 nTPM
GTEx:312.9 nTPM
FANTOM5:2207.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048284Antibody CAB000055
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Medium
Goblet cells Not detected-
Paneth cells High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1283.6
overview
Male, age 65
Small intestine sample 232
nTPM: 1313.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1057.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 990.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1772.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 312.9
Samples: 187

Max nTPM: 1937.7
Min nTPM: 1.1
Std nTPM: 290.2
Median nTPM: 253.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1937.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1215.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1194.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1068.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1006.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 994.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 885.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 875.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 871.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 866.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 864.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 805.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 779.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 776.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 749.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 729.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 727.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 715.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 710.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 680.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 656.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 655.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 651.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 642.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 629.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 626.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 623.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 621.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 621.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 593.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 591.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 585.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 583.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 578.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 576.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 574.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 574.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 550.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 540.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 538.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 535.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 502.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 488.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 469.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 465.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 458.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 449.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 441.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 433.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 425.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 417.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 412.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 411.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 408.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 400.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 397.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 378.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 376.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 372.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 365.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 356.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 343.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 341.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 339.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 332.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 326.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 326.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 316.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 312.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 304.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 304.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 304.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 302.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 299.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 299.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 293.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 292.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 289.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 288.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 287.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 285.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 281.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 280.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 273.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 272.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 272.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 270.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 266.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 263.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 263.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 262.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 262.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 254.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 253.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 247.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 246.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 241.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 238.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 237.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 233.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 230.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 227.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 220.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 219.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 218.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 216.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 213.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 203.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 195.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 191.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 185.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 185.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 184.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 183.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 180.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 179.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 169.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 167.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 161.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 154.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 150.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 149.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 149.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 149.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 147.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 144.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 143.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 141.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 137.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 134.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 133.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 132.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 124.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 123.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 121.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 113.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 112.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 89.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 84.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 84.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 79.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 76.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 74.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 72.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 70.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 64.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 58.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 57.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 53.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 51.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 45.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 44.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 44.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 42.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 40.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 39.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 38.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 36.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 36.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 33.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 31.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 30.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 30.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 29.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 26.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 26.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 26.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 23.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 22.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 19.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 18.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 15.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 15.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 14.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 13.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 13.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 12.1
GTEX-1192X-2526-SM-59868 50-59 years, male 11.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 11.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 9.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 9.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 9.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 8.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 4.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2207.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2207.7
FF:10024-101D6 15,40,85 years, mixed 2207.7

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