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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

27.282
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1347.0 nTPM
FANTOM5:354.3 Scaled Tags Per Million
Pig:1594.4 nTPM
Allen mouse:9.1 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA067442
Medulla oblongata mean intensity 27.282
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 11.023
Raphe magnus nucleus 0.428
Cochlear nucleus 23.938
Lateral paragigantocellular nucleus 25.129
Raphe pallidus nucleus 3.321
Facial nucleus 17.294
Hypoglossal nucleus -
Ambiguus nucleus 22.419
External cuneate nucleus 11.485
Inferior olivary nucleus 21.704
Raphe obscures nucleus 5.704
Dorsal motor nucleus of vagus -

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1347.0
Sample id Sample description nTPM
Area postrema
nTPM: 518.1
2054 Male, age 76, both hemispheres 702.7
2306 Male, age 80, both hemispheres 462.9
2799 Male, age 61, both hemispheres 388.8
Dorsal medullary reticular nucleus
nTPM: 874.5
2040 Female, age 85, both hemispheres 1176.6
2373 Male, age 61, both hemispheres 755.2
2088 Male, age 76, both hemispheres 691.6
Dorsal motor vagal complex
nTPM: 728.6
2000 Male, age 74, unknown 1098.4
2133 Female, age 91, both hemispheres 918.8
2797 Male, age 61, both hemispheres 770.0
2643 Male, age 74, both hemispheres 687.8
2844 Male, age 55, unknown 682.3
2813 Female, age 72, unknown 659.9
2185 Male, age 76, both hemispheres 646.8
2807 Female, age 85, both hemispheres 365.0
Gigantocellular reticular nuclei, medullary
nTPM: 873.9
2462 Male, age 74, both hemispheres 1110.0
1876 Female, age 85, both hemispheres 926.0
2387 Female, age 91, both hemispheres 917.8
2022 Male, age 76, right hemisphere 860.7
2310 Male, age 80, both hemispheres 843.1
2314 Male, age 61, both hemispheres 586.1
Gigantocellular reticular nuclei, pars
nTPM: 1071.4
2168 Male, age 76, both hemispheres 1751.8
2084 Female, age 85, both hemispheres 1068.7
2706 Male, age 80, both hemispheres 874.3
2330 Male, age 80, both hemispheres 866.6
2336 Male, age 61, both hemispheres 795.8
Inferior olive
nTPM: 922.9
2563 Male, age 74, both hemispheres 1334.4
2085 Female, age 85, both hemispheres 1146.1
2379 Male, age 80, both hemispheres 844.4
2628 Female, age 91, both hemispheres 807.8
2178 Male, age 61, both hemispheres 481.9
Lateral medullary reticular nucleus
nTPM: 818.5
2044 Male, age 76, both hemispheres 1331.4
2804 Female, age 91, both hemispheres 985.1
2190 Female, age 85, both hemispheres 787.1
2852 Male, age 80, both hemispheres 644.0
2305 Male, age 74, both hemispheres 617.5
2374 Male, age 61, both hemispheres 546.2
Medial olivary nucleus
nTPM: 585.1
2138 Female, age 91, both hemispheres 953.2
2851 Male, age 80, both hemispheres 612.9
1962 Male, age 76, both hemispheres 549.1
1943 Male, age 61, both hemispheres 225.0
Medial vestibular nucleus
nTPM: 1047.5
2134 Male, age 76, both hemispheres 1236.4
2093 Male, age 80, both hemispheres 1109.1
2624 Male, age 61, both hemispheres 1049.5
2743 Female, age 85, both hemispheres 1037.5
2803 Female, age 91, both hemispheres 994.9
2801 Male, age 74, both hemispheres 857.7
Motor hypoglossal nucleus
nTPM: 813.3
2125 Female, age 91, both hemispheres 1059.2
2461 Male, age 61, both hemispheres 932.9
2132 Female, age 85, both hemispheres 888.4
2182 Male, age 80, both hemispheres 634.1
2277 Male, age 76, both hemispheres 551.9
Nucleus ambiguus
nTPM: 923.1
2096 Female, age 85, both hemispheres 1083.4
2071 Male, age 76, both hemispheres 762.7
Nucleus cuneatus
nTPM: 701.5
2564 Male, age 74, both hemispheres 975.6
2131 Male, age 76, both hemispheres 894.2
2376 Male, age 61, both hemispheres 810.4
2100 Male, age 76, both hemispheres 759.0
2562 Male, age 61, both hemispheres 739.3
2805 Female, age 91, both hemispheres 727.8
2381 Male, age 80, both hemispheres 511.4
2380 Male, age 80, both hemispheres 483.6
2808 Female, age 85, both hemispheres 412.4
Nucleus gracilis
nTPM: 537.6
2627 Male, age 74, both hemispheres 860.3
2299 Female, age 85, both hemispheres 414.0
2382 Male, age 80, both hemispheres 338.4
Nucleus raphe obscurus
nTPM: 628.5
2800 Male, age 61, midline 742.1
2845 Female, age 85, midline 740.5
2142 Male, age 76, midline 403.1
Nucleus raphe pallidus
nTPM: 675.6
2183 Male, age 80, midline 810.1
1924 Male, age 61, midline 807.8
2145 Male, age 76, midline 408.9
Nucleus tractus solitarii
nTPM: 621.8
2144 Female, age 91, right hemisphere 842.0
2656 Male, age 76, both hemispheres 676.0
2191 Female, age 85, both hemispheres 586.7
2307 Male, age 80, both hemispheres 382.5
Parvicellular reticular nuclei
nTPM: 937.0
2095 Male, age 76, both hemispheres 1045.4
2119 Male, age 80, both hemispheres 933.4
2558 Male, age 74, both hemispheres 832.4
Parvicellular reticular nuclei, medullary
nTPM: 907.8
2091 Female, age 85, both hemispheres 1063.6
2189 Female, age 91, both hemispheres 898.6
2181 Male, age 80, left hemisphere 761.2
Peritrigeminal nucleus
nTPM: 1180.9
2136 Male, age 76, both hemispheres 1221.3
2179 Male, age 61, both hemispheres 1214.3
2067 Female, age 85, both hemispheres 1107.2
Prepositus hypoglossal nucleus
nTPM: 919.9
2855 Female, age 85, right hemisphere 969.6
2086 Male, age 80, both hemispheres 870.3
Spinal trigeminal nucleus, caudal
nTPM: 799.9
2390 Female, age 91, both hemispheres 1143.0
2447 Male, age 76, both hemispheres 901.9
2308 Male, age 80, both hemispheres 676.4
2642 Male, age 74, both hemispheres 670.3
2312 Male, age 61, both hemispheres 608.0
Spinal trigeminal nucleus, interpolar
nTPM: 1347.0
2625 Male, age 61, both hemispheres 2374.0
2066 Male, age 76, right hemisphere 1713.3
2033 Male, age 80, both hemispheres 921.9
2389 Female, age 91, both hemispheres 905.6
2386 Female, age 85, both hemispheres 820.2
Spinal vestibular nucleus
nTPM: 878.5
2186 Female, age 91, both hemispheres 968.7
2806 Female, age 85, both hemispheres 947.1
2780 Male, age 80, both hemispheres 937.2
2748 Male, age 76, both hemispheres 901.8
2796 Male, age 61, both hemispheres 867.1
2384 Male, age 74, both hemispheres 649.1
Superior vestibular nucleus
nTPM: 843.4
2061 Male, age 76, both hemispheres 888.7
2015 Male, age 80, both hemispheres 878.4
2383 Male, age 74, both hemispheres 763.3
Ventral medullary reticular nucleus
nTPM: 772.4
2060 Male, age 76, both hemispheres 823.1
2372 Male, age 61, both hemispheres 721.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 933.4
1986 Male, age 76, both hemispheres 1197.7
2302 Female, age 91, both hemispheres 1095.4
2741 Female, age 85, both hemispheres 1035.1
2180 Male, age 61, both hemispheres 701.8
2118 Male, age 80, both hemispheres 637.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 354.3
FF:10038-101F2 18-64 years, mixed 493.2
FF:10174-103C3 60 years, female 298.8
FF:10155-103A2 76 years, female 271.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1594.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1594.4
Samples: 4

Max nTPM: 1784.6
Min nTPM: 1316.2
Sample A Female 1316.2
Sample B Female 1494.9
Sample C Male 1784.6
Sample D Male 1782.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 9.1
79556636 Antisense, RP_071204_01_A02, Mouse strain C57BL/6J (56 days, male) 12.9
275696 Antisense, RP_040617_01_C08, Mouse strain C57BL/6J (56 days, male) 9.1
73512352 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 5.4
71022960 Antisense, RP_050719_02_A05, Mouse strain C57BL/6J (56 days, male) 4.6

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