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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1734.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 798.3
1984
Male, age 76, both hemispheres
1013.1
2301
Female, age 85, both hemispheres
811.3
2188
Female, age 91, both hemispheres
765.5
2090
Male, age 80, both hemispheres
603.4
Dorsal cochlear nucleus nTPM: 722.4
2058
Male, age 76, both hemispheres
902.0
2802
Male, age 74, right hemisphere
729.6
2370
Male, age 61, both hemispheres
690.3
2187
Female, age 91, both hemispheres
677.2
2378
Male, age 80, both hemispheres
612.7
Dorsal tegmental nucleus nTPM: 710.1
2083
Male, age 80, both hemispheres
884.9
1936
Male, age 76, left hemisphere
847.4
2326
Male, age 74, both hemispheres
681.1
2358
Male, age 61, both hemispheres
426.9
Dorsolateral tegmental area nTPM: 686.5
2751
Female, age 85, both hemispheres
881.0
2654
Male, age 80, both hemispheres
878.5
2141
Male, age 76, both hemispheres
794.0
2360
Male, age 74, both hemispheres
656.1
2337
Male, age 61, both hemispheres
223.0
Kolliker-Fuse nucleus nTPM: 1012.5
2163
Male, age 80, both hemispheres
1321.9
2315
Male, age 76, right hemisphere
910.1
2793
Female, age 91, left hemisphere
805.6
Lateral lemniscal nuclei nTPM: 1251.2
2169
Male, age 76, both hemispheres
1779.4
2036
Male, age 80, both hemispheres
1625.2
2746
Female, age 85, left hemisphere
1174.1
2453
Male, age 74, right hemisphere
880.1
2320
Female, age 91, left hemisphere
797.2
Lateral parabrachial nucleus nTPM: 998.6
2139
Female, age 85, right hemisphere
1523.0
2013
Male, age 80, both hemispheres
986.3
2790
Male, age 61, both hemispheres
773.7
2792
Male, age 76, both hemispheres
711.2
Lateral vestibular nucleus nTPM: 1050.2
2184
Male, age 76, both hemispheres
1344.6
2311
Male, age 80, both hemispheres
755.7
Locus coeruleus nTPM: 915.4
2123
Female, age 91, both hemispheres
1068.7
2317
Female, age 72, unknown
1023.5
2014
Male, age 55, unknown
970.8
1980
Male, age 76, both hemispheres
860.4
2720
Male, age 74, both hemispheres
846.0
2788
Male, age 74, unknown
822.5
2162
Male, age 80, both hemispheres
816.1
Medial parabrachial nucleus nTPM: 870.7
2854
Male, age 80, both hemispheres
1000.8
2156
Male, age 61, both hemispheres
914.5
2786
Male, age 76, both hemispheres
814.9
2463
Female, age 85, right hemisphere
812.9
2170
Female, age 91, both hemispheres
810.2
Medial periolivary nuclei nTPM: 1197.4
2063
Male, age 76, both hemispheres
1875.6
2171
Female, age 85, both hemispheres
1694.0
2791
Male, age 74, right hemisphere
1076.3
2081
Male, age 80, both hemispheres
691.5
2458
Female, age 91, both hemispheres
649.9
Motor facial nucleus nTPM: 1193.6
2062
Male, age 76, both hemispheres
2046.9
2795
Female, age 91, both hemispheres
1195.2
2327
Male, age 80, both hemispheres
1120.4
2365
Male, age 74, right hemisphere
1028.2
2697
Female, age 85, both hemispheres
908.4
2126
Male, age 61, both hemispheres
862.3
Motor trigeminal nucleus nTPM: 865.0
2079
Male, age 80, both hemispheres
1362.9
2309
Male, age 76, both hemispheres
836.9
2560
Male, age 74, both hemispheres
780.3
2335
Male, age 61, both hemispheres
769.0
2321
Female, age 91, both hemispheres
576.0
Nuclei of the trapezoid body nTPM: 1734.6
2159
Male, age 61, both hemispheres
2962.5
1983
Male, age 76, both hemispheres
1881.2
2735
Female, age 85, both hemispheres
1776.2
2166
Male, age 80, both hemispheres
1119.7
2368
Female, age 91, both hemispheres
933.6
Nucleus raphe magnus nTPM: 1554.6
2160
Male, age 61, both hemispheres
3313.7
2172
Female, age 85, both hemispheres
1611.5
2455
Male, age 74, both hemispheres
1318.9
2328
Male, age 80, both hemispheres
1223.7
2051
Male, age 76, both hemispheres
1186.1
2459
Female, age 91, both hemispheres
673.6
Paramedian reticular nucleus nTPM: 1061.9
2050
Female, age 85, both hemispheres
1358.4
2057
Male, age 80, both hemispheres
1119.9
2313
Male, age 61, both hemispheres
1109.3
2052
Male, age 76, both hemispheres
659.8
Pedunculopontine tegmental nucleus nTPM: 849.0
1921
Female, age 85, both hemispheres
1046.9
2334
Male, age 80, both hemispheres
848.5
2338
Male, age 61, both hemispheres
651.5
Pontine nuclei nTPM: 1438.5
2727
Male, age 61, right hemisphere
2910.2
2787
Female, age 85, both hemispheres
1794.5
1863
Male, age 55, unknown
1760.8
1968
Male, age 76, left hemisphere
1610.2
2109
Female, age 72, unknown
1156.5
2115
Male, age 80, left hemisphere
832.1
2319
Female, age 91, both hemispheres
759.8
2454
Male, age 74, left hemisphere
683.8
Pontine raphe nucleus nTPM: 1131.4
2122
Female, age 85, midline
1396.5
2853
Male, age 76, midline
866.4
Posteroventral cochlear nucleus nTPM: 757.9
2752
Female, age 85, both hemispheres
1093.9
2070
Male, age 76, both hemispheres
831.5
2371
Male, age 61, both hemispheres
759.4
2135
Female, age 91, both hemispheres
599.1
2341
Male, age 80, both hemispheres
505.6
Principal sensory trigeminal nucleus nTPM: 1561.9
2158
Male, age 61, both hemispheres
2806.8
2008
Male, age 80, left hemisphere
1580.1
2324
Male, age 76, both hemispheres
1207.5
2367
Female, age 91, left hemisphere
653.2
Reticular pontine nucleus, caudal nTPM: 1004.4
2092
Male, age 76, both hemispheres
1462.4
2332
Male, age 80, right hemisphere
1328.5
2457
Female, age 91, both hemispheres
713.1
2559
Male, age 74, both hemispheres
513.6
Reticular pontine nucleus, oral nTPM: 881.5
2012
Female, age 85, both hemispheres
1244.3
1939
Male, age 80, both hemispheres
854.8
2167
Male, age 76, both hemispheres
847.8
2366
Female, age 91, both hemispheres
773.3
2361
Male, age 74, both hemispheres
687.5
Reticulotegmental nucleus nTPM: 933.1
2325
Male, age 76, both hemispheres
1234.8
2333
Male, age 80, both hemispheres
971.9
2322
Female, age 91, both hemispheres
817.7
2452
Male, age 74, both hemispheres
707.8
Spinal trigeminal nucleus, oral nTPM: 936.8
2737
Female, age 85, both hemispheres
1107.9
2164
Male, age 80, both hemispheres
948.5
1978
Male, age 76, both hemispheres
754.2
Subcoeruleus area nTPM: 951.1
2089
Male, age 76, left hemisphere
1248.1
1958
Male, age 80, both hemispheres
1164.1
2323
Female, age 91, left hemisphere
835.2
2451
Male, age 74, both hemispheres
756.9
2369
Female, age 85, left hemisphere
751.1
Superior olive nTPM: 1152.6
1875
Female, age 85, both hemispheres
1522.0
2020
Male, age 76, both hemispheres
1332.8
2329
Male, age 80, right hemisphere
1099.5
2364
Male, age 74, right hemisphere
1083.1
2561
Female, age 91, both hemispheres
725.7
Ventral periolivary nuclei nTPM: 1376.9
2130
Female, age 85, both hemispheres
1811.7
2165
Male, age 80, both hemispheres
1663.0
2023
Male, age 76, both hemispheres
1250.4
2794
Female, age 91, left hemisphere
782.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 946.4
1959
Male, age 76, both hemispheres
1368.0
2161
Male, age 80, both hemispheres
1041.2
2449
Male, age 74, both hemispheres
974.1
2840
Female, age 85, both hemispheres
956.9
2456
Female, age 91, both hemispheres
761.2
2359
Male, age 61, both hemispheres
576.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1635.2
Pig sample
Sample description
nTPM
Pons nTPM: 1635.2
Samples: 4
Max nTPM: 1994.6
Min nTPM: 1261.6
Sample A
Female
1727.4
Sample B
Female
1261.6
Sample C
Male
1557.1
Sample D
Male
1994.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
