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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1167.7 nTPM
HPA Brain:1214.4 nTPM
GTEx:1167.7 nTPM
FANTOM5:1782.8 Scaled Tags Per Million
Pig:226.4 nTPM
Mouse:148.3 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1214.4
Sample id Sample description nTPM
Amygdala
nTPM: 1214.4
2814 Male, age 76, right hemisphere 1514.7
2695 Female, age 67, right hemisphere 1411.9
2514 Male, age 75, right hemisphere 1164.0
1987 Female, age 91, left hemisphere 1057.8
2517 Female, age 94, left hemisphere 923.5
Basal amygdala
nTPM: 868.0
2609 Male, age 75, right hemisphere 1226.2
1955 Male, age 76, both hemispheres 998.2
2110 Male, age 80, left hemisphere 864.3
2827 Female, age 67, right hemisphere 814.2
2685 Female, age 94, left hemisphere 793.7
2243 Female, age 91, right hemisphere 511.4
Central amygdala
nTPM: 907.9
2515 Male, age 75, right hemisphere 1184.7
1905 Male, age 76, both hemispheres 1070.1
2239 Male, age 80, left hemisphere 828.4
2701 Female, age 91, right hemisphere 761.4
2826 Female, age 94, left hemisphere 695.1
Corticomedial amygdala
nTPM: 739.0
2428 Male, age 75, right hemisphere 1060.8
2240 Male, age 76, both hemispheres 951.6
2429 Female, age 94, left hemisphere 733.9
2535 Female, age 67, right hemisphere 631.7
2242 Female, age 91, right hemisphere 570.5
2829 Male, age 80, left hemisphere 485.5
Lateral amygdala
nTPM: 964.9
2516 Male, age 75, right hemisphere 1163.8
1883 Male, age 76, both hemispheres 1102.2
2256 Male, age 80, left hemisphere 1079.5
2830 Female, age 67, right hemisphere 1004.2
2255 Female, age 91, right hemisphere 732.0
2534 Female, age 94, left hemisphere 707.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1167.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1167.7
Samples: 152

Max nTPM: 6745.4
Min nTPM: 321.2
Std nTPM: 994.4
Median nTPM: 907.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6745.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6395.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5469.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4727.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3666.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3344.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3321.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2765.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2726.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2544.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2406.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2312.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2288.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2229.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2209.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2095.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2015.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2014.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1798.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1778.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1765.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1737.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1719.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1649.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1568.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1565.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1555.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1554.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1537.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1481.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1464.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1423.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1396.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1388.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1358.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1346.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1331.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1286.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1285.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1282.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1252.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1235.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1234.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1196.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1194.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1181.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1176.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1174.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1168.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1135.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1128.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1104.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1099.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1095.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1092.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1091.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1076.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1071.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1064.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1058.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1053.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1037.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1032.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1010.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 999.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 998.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 987.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 974.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 967.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 962.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 962.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 954.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 951.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 933.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 919.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 908.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 906.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 900.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 882.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 881.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 866.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 862.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 860.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 847.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 845.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 840.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 836.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 822.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 818.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 813.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 809.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 804.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 775.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 771.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 754.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 750.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 740.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 739.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 732.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 730.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 701.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 697.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 695.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 692.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 683.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 660.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 639.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 626.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 614.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 611.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 599.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 588.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 586.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 584.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 583.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 582.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 576.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 576.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 571.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 569.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 567.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 567.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 562.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 548.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 545.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 535.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 532.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 530.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 526.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 515.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 492.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 483.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 451.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 450.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 447.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 447.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 445.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 437.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 425.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 424.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 419.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 408.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 401.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 388.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 386.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 383.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 370.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 364.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 359.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 344.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 330.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 321.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1782.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1782.8
FF:10151-102I7 76 years, female 1782.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.4
Pig sample Sample description nTPM
Amygdala
nTPM: 226.4
Samples: 4

Max nTPM: 307.5
Min nTPM: 161.8
Sample A Female 228.2
Sample B Female 307.5
Sample C Male 208.0
Sample D Male 161.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 148.3
Samples: 4

Max nTPM: 215.0
Min nTPM: 117.5
Sample A Male 117.5
Sample B Male 125.0
Sample C Female 215.0
Sample D Female 135.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
72182998 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 6.7
74357575 Antisense, RP_050927_03_A08, Mouse strain C57BL/6J (56 days, male) 5.1

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