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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Eyei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Lens fiber cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:464.0 nTPM
GTEx:464.0 nTPM
FANTOM5:1569.8 Scaled Tags Per Million
Pig:102.3 nTPM
Mouse:6566.0 nTPM

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB002053
Corneal epithelial cells Not detected
Lens epithelial cells Not detected
Lens fiber cells High

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB040560
Corneal epithelial cells Not detected
Lens epithelial cells Not detected
Lens fiber cells High

EYE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA057100
Corneal epithelial cells Not detected
Hyaloid membrane Not detected
Lens epithelial cells Not detected
Lens fiber cells High

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

464.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 464.0
Samples: 105

Max nTPM: 1451.4
Min nTPM: 126.5
Std nTPM: 268.3
Median nTPM:
41_1 94 years, female 1451.4
173_1 67 years, male 1144.9
137_1 83 years, male 1141.4
394_1 75 years, female 1121.8
99_1 64 years, male 1106.6
308_1 70 years, female 1026.1
315_1 62 years, female 977.6
295_1 61 years, female 932.8
317_1 60 years, male 927.8
452_1 88 years, female 914.1
379_1 60 years, male 903.9
384_1 83 years, male 857.7
354_1 81 years, female 802.0
351_1 91 years, male 781.1
447_1 81 years, male 753.8
120_1 70 years, female 744.9
17_1 71 years, male 731.6
42_1 85 years, male 669.3
139_1 64 years, female 665.1
288_1 66 years, female 662.1
218_1 71 years, female 658.5
495_1 57 years, female 651.3
349_1 83 years, male 639.0
35_1 74 years, female 627.2
389_1 86 years, female 605.9
322_1 76 years, male 603.4
319_1 81 years, male 601.0
307_1 66 years, female 597.2
4_1 88 years, female 589.4
353_1 82 years, female 553.6
264_1 73 years, female 535.5
237_1 82 years, male 530.2
145_1 84 years, male 528.1
119_1 70 years, female 520.6
491_1 89 years, female 503.1
347_1 72 years, male 499.4
6_1 73 years, female 489.5
350_1 84 years, female 468.6
375_1 74 years, female 467.4
89_1 63 years, male 466.7
243_1 75 years, male 464.9
117_1 61 years, male 464.7
291_1 76 years, male 458.8
2_1 77 years, female 458.3
311_1 78 years, male 450.6
254_1 77 years, female 441.5
386_1 76 years, male 435.1
501_1 88 years, male 433.5
189_1 76 years, male 430.2
313_1 79 years, female 414.0
162_1 79 years, female 408.4
335_1 73 years, female 408.1
18_1 88 years, male 403.7
265_1 87 years, male 401.2
320_1 89 years, female 394.4
314_1 67 years, male 387.9
518_1 75 years, female 375.7
526_1 61 years, male 367.6
348_1 84 years, male 366.0
251_1 78 years, male 360.5
318_1 68 years, male 358.3
286_1 68 years, female 354.8
109_1 81 years, female 346.7
376_1 75 years, female 342.2
324_1 76 years, male 340.3
406_1 79 years, male 326.8
321_1 62 years, female 309.3
517_1 88 years, male 301.0
43_1 64 years, female 294.4
506_1 65 years, male 289.4
352_1 62 years, male 286.9
414_1 84 years, female 284.2
355_1 70 years, female 283.7
9_1 66 years, female 281.9
316_1 62 years, male 274.3
396_1 62 years, male 272.5
415_1 77 years, female 268.8
115_1 83 years, male 266.0
490_1 67 years, female 259.1
266_1 85 years, male 256.5
172_1 72 years, female 251.6
503_1 68 years, male 246.3
405_1 91 years, male 245.3
466_1 57 years, female 236.3
404_1 82 years, female 227.5
499_1 55 years, female 225.5
229_1 69 years, female 224.5
377_1 82 years, female 219.3
153_1 70 years, female 217.6
413_1 59 years, female 216.2
177_1 74 years, male 212.9
292_1 71 years, male 207.6
142_1 61 years, female 200.5
217_1 76 years, male 197.2
163_1 78 years, male 191.7
356_1 87 years, female 191.5
81_1 67 years, male 179.2
480_1 63 years, male 177.5
293_1 68 years, female 172.6
425_1 59 years, female 167.6
468_1 89 years, male 155.9
126_1 63 years, male 154.3
246_1 77 years, male 150.5
32_1 67 years, male 147.6
149_1 88 years, male 126.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1569.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1569.8
FF:10030-101E3 24-65 years, mixed 1569.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.3
Pig sample Sample description nTPM
Retina
nTPM: 102.3
Samples: 4

Max nTPM: 163.9
Min nTPM: 77.4
Sample A Female 77.4
Sample B Female 84.1
Sample C Male 163.9
Sample D Male 83.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6566.0
Mouse sample Sample description nTPM
Retina
nTPM: 6566.0
Samples: 4

Max nTPM: 20287.0
Min nTPM: 176.7
Sample A Male 5364.1
Sample B Male 436.3
Sample C Female 176.7
Sample D Female 20287.0

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